Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1326 114 4e-20 seq1470 109 2e-18 seq1071 100 8e-16 seq1604 84.2 6e-11 seq1028 84.2 6e-11 >seq1326 Length=1995753 Score = 114 bits (126), Expect = 4e-20 Identities = 273/407 (67%), Gaps = 8/407 (2%) Strand=Plus/Plus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| || ||||| ||||||||||| || || || ||||| | ||| || ||| | Sbjct 1262054 TAAACCCGTCCATTTCGGTTAAAATTTGGTTTAGCGTCTGTTCACGTTCGTCGTTTCCTC 1262113 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 ||| | | ||| || ||| | || | |||||||||||||| || |||||||| | Sbjct 1262114 CTCCTATA----CCGGTTC-CTC-TCATTCTCCCAACAGCATCAATCTCATCAATGAACA 1262167 Query 289058 TCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAA 289117 | ||| || ||||| | || | ||| || ||||| || | || ||||| | Sbjct 1262168 CTAAACAAGGTGAATTAGCCTTTGCCTTGTTAAACAAGTCTCTAACCCTAGAGGCTCCGA 1262227 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTT 289177 ||||||| |||| |||| || || || |||| | | | |||| ||| |||| Sbjct 1262228 CACCAACAAACATCTCTATGAACTCTGAGCCGGACAATGAGAAAAATGGAACACCGGCTT 1262287 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | || |||| ||| | |||| || ||||| || |||||||| ||||| || | | Sbjct 1262288 CTCCGGCTATAGCCTTGGCCAAGAGAGTCTTTCCAGTTCCAGGCGGTCCGGTCAACAAGA 1262347 Query 289238 CTCCCTTTGGTACTTTTGCCCCAGCAGACTTA-TATTTCTCAGGGCTCTTTAAAAATTCT 289296 | || ||||| | ||| ||||| || || | |||| || || | | || ||||| Sbjct 1262348 CACCTTTTGGGATTTTAGCCCC-CAAGGCTGAGAATTTATCTGGTGTTCTCAAGAATTCA 1262406 Query 289297 ACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 ||||| || |||| || | || || || || |||||| ||||| Sbjct 1262407 ACAATCTCTTCAAAGTCTTGCTTGGCTTCGTCTACTCCTGCAACATC 1262453 >seq1470 Length=2917085 Score = 109 bits (120), Expect = 2e-18 Identities = 356/543 (66%), Gaps = 20/543 (4%) Strand=Plus/Plus Query 288817 CCAGATACATCAGGCAAACCCACCCGCACCCTCCTATCAAACCTACCAGAACGAGTTAAT 288876 |||| |||||||||| | |||| || || ||||| ||||| | | ||| Sbjct 2793162 CCAGCTACATCAGGCCTATCCACTGTGACTTGCCGGTCAAATCTACCGGGTCTCAGCAAT 2793221 Query 288877 GCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT-TTG 288935 || | ||| | | ||| | ||| || ||||| ||||| |||| | | ||| || Sbjct 2793222 GCGGAGTCAAGAACATCAGGTCTATTGGTTGCAGCCAACACAATGACAC---CGGAGTTA 2793278 Query 288936 CTT--AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTT 288993 | |||||||||||| || |||| ||||||| || ||||| || ||||||||| Sbjct 2793279 CCAGAAAATCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTT 2793338 Query 288994 GAACCTCTTGAATCACCCGAATCGCTCCttttt--ttACCAACAGCATCAATTTCGTCAA 289051 ||| | || || | |||||| | | |||| || |||||||| || || | Sbjct 2793339 CCACCGC-----CCATCCCA---GCTCCTCTCTGCCTACCCACGGCATCAATCTCATCGA 2793390 Query 289052 TGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATG 289111 | || | | ||| || | || | |||| | |||| || || || || | || | Sbjct 2793391 TAAACACAATACAAGGTGCTTTCGATTTCGCCTTCTCAAACAAATCCCTAACTCTAGACG 2793450 Query 289112 CTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTG-AATGAATGTTACA 289170 | || | ||||||| | | || ||||| ||||| || | || || || ||| | || Sbjct 2793451 CACCCACACCAACAAAAAGCTCAACAAACTCAGACGCAG-CACATGAAAAGAACGGCACT 2793509 Query 289171 TTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCT 289230 ||||| || ||||| || || |||| ||| ||||| || || || ||||| || | Sbjct 2793510 CCAGCTTCTCCAGCTACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGGTGGACCAACC 2793569 Query 289231 AATAGAACTCCCTTT-GGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAA 289289 || | ||| |||||| || | || || || || | || || ||||| |||| || Sbjct 2793570 AACA-AACACCCTTTAGGAATCTTAGCACCTAAAGCTGTGTACTTATCAGGATTCTTCAA 2793628 Query 289290 AAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAA 289349 ||| || |||| ||| | | ||| || || | |||| |||||| ||||| |||| Sbjct 2793629 AAAATCAACAACTTCTTGTAACTCAAGCTTAGCTTGATCAGCTCCTGCAACATCTCCAAA 2793688 Query 289350 AGT 289352 ||| Sbjct 2793689 AGT 2793691 >seq1071 Length=2817113 Score = 100 bits (110), Expect = 8e-16 Identities = 305/468 (65%), Gaps = 14/468 (3%) Strand=Plus/Minus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCC 288948 || || |||||||| ||||| || | ||| | || | | | || ||| |||||| Sbjct 1432712 ATGTCTGCTCTGTTGGTTGCAGCAACTACGATAACACCAGTGTTACCCTCAAAACCATCC 1432653 Query 288949 ATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCA 289008 || || | | |||||||| || ||||| ||||||||||| ||||| || Sbjct 1432652 ATCTCAGTCAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCATT---ACCTC------CA 1432602 Query 289009 CCCGAATC--GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064 || | || | |||| ||| ||||||||||||| ||||| || | |||| | || Sbjct 1432601 CCA-ATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCCACAAAAACAATGCA 1432543 Query 289065 CGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAAC 289124 ||||| ||||| | | || || || | || | || | ||||| |||| ||| || Sbjct 1432542 CGGAGCATTTTCTTTTGCTTTTTTGAAAAGATCGCGGACCCTTGATGCACCAACACCGAC 1432483 Query 289125 ATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGC 289184 | |||| || ||||| |||||| | || | || ||| | |||| ||||| || || Sbjct 1432482 AAACATCTCAACAAACTCAGAACCCGAGATGGAAAAGAAGGGTACACCAGCTTCACCAGC 1432423 Query 289185 TACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTT 289244 | || | |||| || || || || || ||||| || || | | ||||| || || Sbjct 1432422 AATGGCTTTTGCCAACAGGGTTTTCCCAGTACCAGGAGGACCAACAAGGAGAACACCTTT 1432363 Query 289245 TGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTC 289304 || | || ||| | | | | ||||||| |||| | ||| || || | ||| Sbjct 1432362 GGGGATCCGGGCACCAACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACTTC 1432303 Query 289305 CTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | | || | || || ||||| ||| || |||||| ||||||| Sbjct 1432302 CATGAAATCTTGCTTAGCTTCATCGACTCCAGCAACATCATCAAAAGT 1432255 >seq1604 Length=1253100 Score = 84.2 bits (92), Expect = 6e-11 Identities = 151/220 (69%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| || |||||||| || || || ||||| |||||||| | ||||| |||| | Sbjct 402913 TACCCTTTCTCTTGCCTCCTCCTTGGTCAACATAACGAGCAGTATCGTTGAATACACGCA 402972 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 |||| |||| ||||||||| || || ||||| || || ||||| | |||| || | Sbjct 402973 GCATTGGAACAATACCATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCAC 403032 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| ||||||| | ||||||||||| | |||| ||| ||| || || | Sbjct 403033 GAATATTATGAGCTGAAACACCAATACCACCAGCAGATTTGCTAATAACAGCACACTCTT 403092 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | | || | | || || ||||| |||||||| ||| Sbjct 403093 TGAGTGTTTCATATATGCCCTCAATGCTATCATCTTTCAT 403132 >seq1028 Length=1373109 Score = 84.2 bits (92), Expect = 6e-11 Identities = 311/475 (65%), Gaps = 28/475 (6%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAG-ATTCGGTTTGCTT-AAATCCAT 288946 ||||| ||||| || ||||| || | ||| | || | | | ||| ||| ||| |||| Sbjct 777712 ATATCTGCTCTATTGGTTGCAGCAACTACGATAACACCAGT--GTTACCTTCAAAACCAT 777769 Query 288947 CCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAAT 289006 |||| |||| | ||||| || || ||||| |||||||| || ||||| Sbjct 777770 CCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTTTCATCGTT---ACCTC------ 777820 Query 289007 CACCCGAATC--GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAAATCACA 289062 |||| | || | |||| ||| ||||||||||||| ||||| |||| || | | Sbjct 777821 CACCA-ATTCCAGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCAACAAAGACAATG 777879 Query 289063 CACGGAGAATT----TTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAG 289118 || |||| || ||| || | ||| ||| | || | || | || || |||| Sbjct 777880 CAAGGAGCGTTCTCCTTGGCTTTC--TTGAAAAGA--TCGCGGACTCTTGAGGCACCAAC 777935 Query 289119 ACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTT 289177 ||| ||| |||| || ||||| |||||| | || | | || | ||| | ||| |||| Sbjct 777936 ACCGACAAACATCTCAACAAACTCAGAACCTGAGA-TGGAGAAGAAAGGCACACCAGCTT 777994 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | || || | || | || | ||| || || || || ||||| || || | |||| Sbjct 777995 CACCAGCAATGGCTTTTGCTAAAAGGGTTTTCCCGGTACCAGGAGGACCAATAAGGAGAA 778054 Query 289238 CTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTA 289297 | || || || | || || ||| | | || || |||| || |||| | ||| || | Sbjct 778055 CACCTTTCGGGATCTTGGCACCAACCGCAGTAAATCTCTCGGGTTTCTTCAGAAACTCCA 778114 Query 289298 CAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | | |||| | || | ||||| |||||| ||| || |||||| |||| || Sbjct 778115 CCACTTCCATGAAATCTTGCTTTGCTTCATCAACTCCAGCAACATCATCAAATGT 778169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471780940703128