Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq3 125 8e-24 seq178 123 3e-23 seq1259 93.3 5e-14 >seq3 Length=3374423 Score = 125 bits (138), Expect = 8e-24 Identities = 154/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 151989 TGTGAAGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTAC 152048 ||||| || ||| ||| | | ||||| ||||||||| ||| | ||| || ||| Sbjct 1010047 TGTGACGACGACGTTTACGTTCTTGATGCGGCTGAGGAAGCTGGAATCGATTTGCCTTAC 1009988 Query 152049 TCTTGTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGAT 152108 ||||| ||||||||| | ||||| ||||||||||| ||| | ||| | ||||| Sbjct 1009987 TCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAAGTTGCGTCTGGATCTGTTGAC 1009928 Query 152109 CAGAGTGACCAATCATTCTTGGATGATGACCAGATTGAATCA-GGATTCGTGCTGACCTG 152167 ||| |||||| ||| | ||||||||||||||| ||||| || || || || || || Sbjct 1009927 CAGTCTGACCAGAGTTTCCTTGATGATGACCAGATT-AATCAAGGGTTTGTTCTCACTTG 1009869 Query 152168 TGTTGCATATCCAACTTCTGATGTCACC 152195 ||| || ||||| ||||||||||| ||| Sbjct 1009868 TGTGGCTTATCCTACTTCTGATGTTACC 1009841 >seq178 Length=2153606 Score = 123 bits (136), Expect = 3e-23 Identities = 137/179 (77%), Gaps = 3/179 (2%) Strand=Plus/Plus Query 151192 TTACCGCTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTCCAGTTGCTGCTG 151250 || ||| ||||||||||||| ||||| ||| |||||||| || |||| ||||| |||| Sbjct 356578 TTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAACTCCTGTTGCAGCTG 356636 Query 151251 CGAGT-GCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCC 151309 ||| | || || ||| | ||||||| | || || || ||| ||||||| ||||| Sbjct 356637 CGACTTGCTGTTTTCTTGATCTATCCAATTGGGCAGGGAAGTTTTTCTGATGGTATGCCT 356696 Query 151310 CTGGGTATTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCT 151368 || || || ||||| || ||||||| ||| |||| |||| || |||||||||||||| Sbjct 356697 CTAGGAATCTCTGGTACTTTCAACTTTATGATTGTACTCCAGGCTGAGCACAACATTCT 356755 >seq1259 Length=1985952 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 151993 AAGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTT 152052 |||| ||||| |||||||||||||| ||||| || ||||||||| || ||||||| Sbjct 147062 AAGACGACCAATACATCTTGGATGCAGCTGAAGAGGCAGGAGTTGACTTGCCTTACTCTT 147121 Query 152053 GTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAG 152111 | || || ||||| |||||| |||| || ||| |||||||| || | ||||| ||| Sbjct 147122 GCCGAGCCGGTGCGTGTTCCACTTGCGCGGGTCAGATTGTGTCAGGCAACGTTGACCAG 147180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549609044175680