Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1639 134 2e-25 >seq1639 Length=5101707 Score = 134 bits (148), Expect = 2e-25 Identities = 214/300 (71%), Gaps = 8/300 (3%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| ||||| || || ||||||||||| || || || || | | |||| | ||||| Sbjct 2280051 GAGTGAATGTTTTCAATCGCGATCTGGAAACCATAGAAAGCACGCGCCTCCGAGACTTGA 2280110 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||| || || || ||||| |||||| ||||| |||||||| Sbjct 2280111 ACATCGGACATGAATCGAGAAGCGAGATTCTCTAACACGATTCCGTCAGATGCGGCGAAG 2280170 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG---CGACACCCAGTGG 869809 ||||| |||||||| ||||| ||||| || || ||||| |||| | |||| | | Sbjct 2280171 AAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTCTCCCAATCG 2280230 Query 869810 ACGGTGTC-GGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868 |||| | | | || || || || || |||||||||| ||| || ||||| || || Sbjct 2280231 CGATTGTCTTGTGAT-AGATCTACTTCTTCAGCGGTCCAGAACGATGCTTCGGCTTTCTT 2280289 Query 869869 GTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGT-TGGGGTTG 869926 |||||||||||| | | ||||| |||| ||||| | ||| || | || |||||||| Sbjct 2280290 GTACATCTCCCAGATCTCTGGGTAGTGGATTGGGAACA-TACAGAATCTGTCTGGGGTTG 2280348 Score = 87.8 bits (96), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| || ||||| |||||| || | | || |||||||| || || ||| Sbjct 2279772 CCTTCGTCTCGTGAGATCAATTCGTTTGAGAAAGTTAACCCAGGCATGAGACCTCGTTTC 2279831 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| ||||||| ||| || || || ||||| |||||||| || || || || Sbjct 2279832 TTAAGCCAGAAGATGGAGCAAAAGCTTCCAGAGAAGAAGATGCCTTCAACACAAGCGAAA 2279891 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 | | | || || || ||||| | ||| || || |||||| ||||||||||| Sbjct 2279892 GCTACAATTCGTTCAGCGAAGGTTT-GAGATCC-----GTCGATCCATTTCATCGCCCAC 2279945 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTC 869412 | || || ||| || | || | ||| || || |||||||| || || || Sbjct 2279946 TGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATCGCGCGAAATAGATGATC 2279998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106979666256248