Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1639 127 3e-23 >seq1639 Length=5101707 Score = 127 bits (140), Expect = 3e-23 Identities = 228/328 (70%), Gaps = 9/328 (3%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 |||||||| || |||||||||||| | |||| | || |||||||| || || || Sbjct 2279772 CCTTCGTCTCGTGAGATCAATTCGTTTGAGAAAGTTAAC-CCAGGCATGAGACCTCGTTT 2279830 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| ||||| ||||||| || || || || ||||| |||||||| || || || || Sbjct 2279831 CTTAAGCCAGAAGATGGAGCAAAAGCTTCCAGAGAAGAAGATGCCTTCAACACAAGCGAA 2279890 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | || | || || || || || | || || || |||||| ||||||||||| Sbjct 2279891 AGCTACAATTCGTTCAGCGAAGGTTTG-AGATCC-----GTCGATCCATTTCATCGCCCA 2279944 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 || || || ||| || | || | ||| || || |||||||| || || || |||| Sbjct 2279945 CTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATCGCGCGAAATAGATGATCTCTCTC 2280004 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 || |||| || || |||| ||||| || |||| ||||| |||||||| Sbjct 2280005 TTTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACATCTCGGAGTGAATGTTTTC 2280064 Query 794640 GATGGCGATCTGGAAGCCATA-AAAGCA 794666 || ||||||||||| ||||| |||||| Sbjct 2280065 AATCGCGATCTGGAAACCATAGAAAGCA 2280092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916039607853416