Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1125 109 4e-19 seq236 104 2e-17 seq1328 100 2e-16 seq793 98.7 6e-16 seq1396 96.9 2e-15 seq1208 95.1 8e-15 seq1177 82.4 5e-11 >seq1125 Length=2998257 Score = 109 bits (120), Expect = 4e-19 Identities = 155/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| || |||||||| ||||| ||||| | || | | || | || Sbjct 292764 AGGACAAGGTGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGGCTAAGGTTCGTCCGTCT 292823 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||||||||| |||| ||| |||||||| | || | || |||||||| Sbjct 292824 TCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCC 292883 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| ||| | |||||| || | ||| || Sbjct 292884 TGGATCTTGGCCTTGAC--AT--TGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGAT 292939 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| ||||| || || ||||||||||| Sbjct 292940 TGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 292975 >seq236 Length=1640546 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| || |||||||| ||||| ||||| | || |||| | || Sbjct 1089246 AGGACGAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCT 1089187 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || |||||||| |||| ||| |||||||| | || | || |||||||| Sbjct 1089186 TCGAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCT 1089127 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||| || || | ||||| || || |||||| || | |||||| Sbjct 1089126 TGGATCTTCGCTTTCAC--AT--TGTCGATGGTGTCTGAGGACTCGACCTCTAGGGTTAT 1089071 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| ||||| ||||| || || ||||||||||| Sbjct 1089070 GGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 1089035 >seq1328 Length=1576597 Score = 100 bits (110), Expect = 2e-16 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 |||| ||||||| || ||||||||| ||||| || |||| || | || |||| Sbjct 273320 AGGAGAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCCGCAAGCGTACGACCATCC 273261 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| ||||| ||||| |||| ||||||||| | || | || || || || Sbjct 273260 TCGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGAGGGATTCCTTCTTTATCT 273201 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTC-AT-TGGCCT--CGACATCAACGGTTAT 34941 | || || |||||| ||||||| || || || |||| |||| ||||| Sbjct 273200 TGGATCTTGGCCTTGACGT----TATCGATGGTATCTGAGCTTTCGACCTCAAGTGTTAT 273145 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || || ||||| |||||||||||||| Sbjct 273144 AGTCTTCCCTGTAAGAGTCTTAACAAAGATCTGCAT 273109 >seq793 Length=772624 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| ||| ||||| || ||||| ||||| | || | | | || Sbjct 611146 AGGACAAGGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCAGCAAGAGTTCTTCCGTCT 611087 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||| ||||| || | ||||||||| | || | || |||||||| Sbjct 611086 TCAAGCTGCTTACCGGCAAAGATGAGCCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCC 611027 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| ||||||| | || | ||| | ||| || || | || |||||| Sbjct 611026 TGGATCTTTGCTTTGACGTTGTCAATAGTATCAGAGCTCTCAACCTCCAAAGTAATGGTC 610967 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| |||||||||||||| Sbjct 610966 TTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 610935 >seq1396 Length=1446835 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||| || || || |||| ||| ||||||||| ||||| ||||| | ||| | | | Sbjct 400136 CCTGAGAACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTTCTGCC 400077 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 || || |||||||||||||||||||||| || |||||| || | || | |||||||| Sbjct 400076 GTCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCCGGTGGGATACCCTCCTT 400017 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 ||| | || || ||| ||| | || | ||| | || || || | ||| || Sbjct 400016 GTCCTGGATCTTAGCTTTAACGTTGTCGATTGTGTCAGAGCTTTCCACCTCGAGGGTGAT 399957 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || ||||| || || || || ||||| Sbjct 399956 AGTCTTCCCAGTTAGGGTTTTGACGAAAATTTGCAT 399921 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||| ||||||| || | |||| ||||||||||| || || || | | | || | Sbjct 399908 CCTTAGGACCAAATGGAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAACGTACGGCC 399849 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| || || |||||||| |||||||| || | ||||| || | || | |||||||| Sbjct 399848 ATCCTCTAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCCGGAGGAATGCCCTCCTT 399789 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 ||| | || || ||| ||| | || | ||| | || || || | ||| || Sbjct 399788 GTCTTGGATCTTGGCTTTAACGTTGTCGATTGTGTCAGAGCTTTCCACCTCGAGGGTGAT 399729 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| ||||| ||||| || ||||||||||| Sbjct 399728 AGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 399693 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||||| ||||| ||| ||| ||||| ||||| || |||| | | | || |||| Sbjct 400589 CAAGACCAAGTGAAGGGTTGACTCTTTCTGGATGTTGTAATCCGCCAAGGTACGACCATC 400530 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| ||||||||||| ||||||| | |||||||| | || | || ||||| || Sbjct 400529 CTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTATC 400470 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | || | || | ||| || || | ||| ||||| Sbjct 400469 CTGAATCTTGGCCTTCACGTTGTCGATGGTGTCTGAGCTCTCCACCTCCAAGGTGATGGT 400410 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| ||||| ||||| || || |||||||| Sbjct 400409 CTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 400377 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||| || |||| ||||| ||| ||||||||| ||||||||||| | | |||| | Sbjct 400820 CCTTAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCAGCCAAAGTGCGACC 400761 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| || || || || || |||||||| || || |||||||| | || | || ||||| Sbjct 400760 ATCCTCAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTT 400701 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 ||| | || || || ||| | || | ||| | ||| || || | ||| || Sbjct 400700 GTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCCACCTCCAAGGTGAT 400641 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || || | ||||| || |||||||||||| Sbjct 400640 AGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 400604 Score = 87.8 bits (96), Expect = 1e-12 Identities = 163/234 (70%), Gaps = 14/234 (6%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG-- 34808 ||||| | || | || ||||| ||||| || ||||||||||||||| ||||| | Sbjct 400375 CCTCCACGCAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCC 400316 Query 34809 ATAGG-CTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 | || |||| | || || ||||| ||||| || ||||||| || |||||||| | Sbjct 400315 AAAGTTCTGC---CGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGT 400259 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGC 34923 || | ||||||||||| | ||||| |||||| || | ||||| || | Sbjct 400258 GGAATACCCTCCTTGTCCTGAATTTTAGCTTTGAC--AT--TGTCGATGGTGTCGGAGCT 400203 Query 34924 CTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | || ||||||||||| || | ||||| || || || ||||| Sbjct 400202 CTCCACCTCCAAAGTGATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 400149 >seq1208 Length=4595443 Score = 95.1 bits (104), Expect = 8e-15 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| || ||||| || || | || |||| |||| || || ||||| |||| || Sbjct 3925998 CTCCTTTTGGATGTTGTAATCAGCGAGTGTGCGTCCATCTTCGAGCTGCTTACCGGAAAA 3925939 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| |||| ||||||||| | || | |||||||||||| | || || ||||| | Sbjct 3925938 GATGAGTCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTCAATCTTCGCCTTGAC--A 3925881 Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 | ||||||| || | |||| || || | || ||||||||||| || |||||| Sbjct 3925880 T--TATCGATTGTGTCTGAGCCCTCAACCTCCAAAGTAATGGTCTTTCCAGTACGGGTCT 3925823 Query 34962 TTACAAAGATCTGCAT 34977 | ||||| || ||||| Sbjct 3925822 TCACAAAAATTTGCAT 3925807 >seq1177 Length=2734319 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || || |||| || |||| ||| | ||| || ||||| ||||| || || | Sbjct 987953 CCACCTCTTAACCGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGCC 987894 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | |||| |||| || || || || ||||||||||||| || ||||||||| | || Sbjct 987893 AAGGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 987834 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTC 34926 | || |||||||| | || ||| || || || | ||||| || | ||| Sbjct 987833 ATGCCTTCCTTGTCCTGGATCTTTGCCTTAAC--AT--TGTCGATGGTGTCGGAGCTCTC 987778 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| |||| || |||||||| || || || || || || || || ||||| Sbjct 987777 GACCTCAAGAGTGATGGTCTTACCAGTTAGTGTTTTCACGAAAATTTGCAT 987727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325685083523336