Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1396 107 2e-18 seq1328 96.9 3e-15 seq1208 93.3 3e-14 seq793 89.7 4e-13 >seq1396 Length=1446835 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||||||||| ||||| || || || || || ||||| || | || |||| ||| Sbjct 400149 ATGCAAATTTTCGTCAAGACGTTGACTGGAAAGACCATCACTTTGGAGGTGGAGAGCTC- 400207 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || ||| || ||| || || || || | || ||| || Sbjct 400208 CGACACCATCGACAATGTCAAAGCTAAAATTCAGGACAAGGAGGGTATTCCACCGGACCA 400267 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | || | ||| || ||||| || || |||| || ||| |||| |||||||| Sbjct 400268 GCAGAGATTGATCTTTGCTGGAAAACAACTTGAAGACGGCAGAACTTTGGCTGACTACAA 400327 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||| ||||||||||| | ||| |||| ||| | |||| || || Sbjct 400328 CATTCAGAAGGAGTCTACACTTCACTTGGTCTTGCGTCTGCGTGGAGG 400375 >seq1328 Length=1576597 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| || ||| | || ||||| ||||| || | || || ||| Sbjct 272881 ATGCAAATCTTTGTAAAGACTCTTACGGGCAAGACCATAACTCTTGAGGTTGAAAGCTC- 272939 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | || || |||||| ||||| ||||| | || ||| || Sbjct 272940 CGACACAATTGACAATGTTAAGGCAAAGATCCAAGATAAGGAAGGAATCCCTCCGGACCA 272999 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||||||||| ||| ||||||||||| || || | | || |||| || |||| Sbjct 273000 GCAGAGACTTATTTTTGCCGGTAAACAGCTTGAAGATGGCCGTACTTTGGCTGATAACAA 273059 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGG 107779 |||||||||||||| || | ||| |||| | || ||| |||| Sbjct 273060 TATTCAAAAGGAGTCAACCCTCCACTTGGTTCTTAGGTTGAGAGG 273104 >seq1208 Length=4595443 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||||||||| || ||||| | || ||||| |||||||| |||| | ||| ||| Sbjct 3925351 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGATAGAGAGCT-C 3925409 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| ||| | | || || ||||||| || || |||| | | || ||| || Sbjct 3925410 TGATACTATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGACATTCCTCAGGACCA 3925469 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| ||| | || | || |||||||||||||| || || |||| || ||||| Sbjct 3925470 GCAAAGATTAATCTTCGCCGGTAAACAGCTGGAAGATTGTCGTACCTTGGCAGATTACAA 3925529 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || ||||| || ||| | ||| |||| Sbjct 3925530 CATCCAGAAGGAATCAACGCTCCACTTGGT 3925559 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/209 (69%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 107558 GCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGGCG 107616 ||| || ||||| || || || |||||||||||||| || | || || ||| | Sbjct 3925581 GCAGATCTTTGTGAAGACGTTGACAGGCAAAACCATCACTTTGGAGGTTGAAAGCTCT-G 3925639 Query 107617 ATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGC 107676 ||||| | | | | || ||| |||||| || || ||||| | || ||| |||| Sbjct 3925640 ATACTATTGACAACGTTAAAGCTAAGATTCAAGACAAGGAAGGAATCCCTCCGGACCAGC 3925699 Query 107677 AGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACA 107736 ||| ||||| | || ||||| ||||| ||||| | | ||| | || |||||||||| Sbjct 3925700 AGAAGCTTATCTTTGGTGGTAAGCAGCTAGAGGATGGTCACACACTTGCTGACTACAACA 3925759 Query 107737 TTCAAAAGGAGTCTACGTTGCACATGGTG 107765 | ||||| ||||| || | || ||||| Sbjct 3925760 TCCAAAAAGAGTCCACACTCCATTTGGTG 3925788 >seq793 Length=772624 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| ||| | || ||||| |||||||| | || ||| ||| Sbjct 610935 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATTACTTTGGAGGTTGAGAGCTCT 610994 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | | || ||| |||||| || || ||||| | || ||| || Sbjct 610995 -GATACTATTGACAACGTCAAAGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCA 611053 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || || || | ||| ||||| ||||| || |||| | ||| | || |||||||| Sbjct 611054 GCAAAGGCTCATCTTTGCCGGTAAGCAGCTTGAAGACGGAAGAACTCTTGCTGACTACAA 611113 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| |||||||| || || Sbjct 611114 CATCCAAAAGGAATCGAC 611131 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||||||||| || ||||| | || ||||| ||||| || |||| ||| ||| Sbjct 610707 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 610766 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || |||||| |||||||||||| | || ||| || Sbjct 610767 -GACACCATCGACAATGTTAAGGCAAAGATCCAGGATAAAGAAGGCATTCCTCCGGACCA 610825 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| ||| | || | || ||||||||||| || || | | || |||| || ||||| Sbjct 610826 GCAAAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACAA 610885 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||| || || || || | ||| |||| Sbjct 610886 CATTCAGAAAGAATCGACCCTCCACTTGGT 610915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398867349611416