Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1177 131 1e-25 seq204 131 1e-25 seq1396 129 5e-25 seq793 125 6e-24 seq1208 123 2e-23 seq1328 109 4e-19 seq406 105 5e-18 seq971 104 2e-17 >seq1177 Length=2734319 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || || || || ||||| || || || |||||||| || ||||| ||||| || Sbjct 987953 CCACCTCTTAACCGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGCC 987894 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || ||||| || || | |||||||||||||| ||||| ||| Sbjct 987893 AAGGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 987834 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | ||| || ||| | || | ||||| || || || Sbjct 987833 ATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCGGAGCTCTCGACC 987774 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || ||||||| ||||| || || || ||||| Sbjct 987773 TCAAGAGTGATGGTCTTACCAGTTAGTGTTTTCACGAAAATTTGCAT 987727 >seq204 Length=2333866 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | ||| |||||||||||||| || |||||||| || ||||| ||||| || Sbjct 1139362 CCTCCTCTAAGACGAAGCACCAAATGAAGAGTTGATTCTTTCTGGATGTTGTAATCGGCG 1139303 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | || || | |||||| || || | || || | |||||||||||| || Sbjct 1139302 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATTAAACGTTGCTGATCCGGTGGG 1139243 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | || ||| ||| | || | ||||| || ||| || Sbjct 1139242 ATTCCTTCCTTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCGGATGATTCAACC 1139183 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || ||||| || || || |||| |||||| || || ||||||||||| Sbjct 1139182 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 1139133 >seq1396 Length=1446835 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || ||||| ||||| ||||| || || || || |||||||| || || || Sbjct 400375 CCTCCACGCAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCC 400316 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | || || |||||||| |||||| | |||||||| ||||| ||||| ||| Sbjct 400315 AAAGTTCTGCCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGTGGA 400256 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| ||||| || |||||| | ||||||| | || | ||||| || || || Sbjct 400255 ATACCCTCCTTGTCCTG-AATTTTAGCTTTGACATTGTCGATGGTGTCGGAGCTCTCCAC 400197 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || || || ||||| || || || || || || ||||| Sbjct 400196 CTCCAAAGTGATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 400149 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || | |||||| || || || || || ||||| || || || | ||| | || Sbjct 400132 AGAACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTTCTGCCGTCC 400073 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 |||||||| || || || | |||||||||||||||||||| || |||||||| ||||| Sbjct 400072 TCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCCGGTGGGATACCCTCCTTGTCC 400013 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || ||| || | || | |||||||| ||| || || || || ||||| Sbjct 400012 TGGATCTTAGCTTTAACGTTGTCGATTGTGTCAGAGCTTTCCACCTCGAGGGTGATAGTC 399953 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||||| |||||| || || || ||||| Sbjct 399952 TTCCCAGTTAGGGTTTTGACGAAAATTTGCAT 399921 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || |||||||| || |||||||| || ||||| || ||||| || | || || ||| Sbjct 399904 AGGACCAAATGGAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAACGTACGGCCATCC 399845 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || || || ||||| | || | || ||||||||||| ||||| ||||| |||||| Sbjct 399844 TCTAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTGTCT 399785 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || ||| || | || | |||||||| ||| || || || || ||||| Sbjct 399784 TGGATCTTGGCTTTAACGTTGTCGATTGTGTCAGAGCTTTCCACCTCGAGGGTGATAGTC 399725 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAA 29792 || || || | || ||||| || |||||||| | ||| Sbjct 399724 TTTCCGGTGAGAGTCTTAACGAAGATCTGCATCTGAAA 399687 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 |||||||| ||||| || || || || || |||||||| || || | |||||| ||| Sbjct 400816 AGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCAGCCAAAGTGCGACCATCC 400757 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || ||||||||||| | || | | ||||| ||||| |||||||| || ||||| Sbjct 400756 TCAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCC 400697 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || || || | || | |||||||| || || || | || |||||| Sbjct 400696 TGGATCTTAGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCCACCTCCAAGGTGATAGTT 400637 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || || || |||||||| Sbjct 400636 TTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 400605 >seq793 Length=772624 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || || || || ||||| || || || |||||||| |||||||| ||||| || Sbjct 610933 CCACCTCTTAACCGGAGAACCAAGTGGAGGGTCGATTCTTTCTGAATGTTGTAATCGGCC 610874 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || ||||| || || | || ||||||||||| ||||| ||| Sbjct 610873 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCGGAGGA 610814 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||| || || | ||| || ||| | || | |||||||| || || Sbjct 610813 ATGCCTTCTTTATCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACC 610754 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || |||||||| | ||||| || || || ||||| Sbjct 610753 TCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 610707 >seq1208 Length=4595443 Score = 123 bits (136), Expect = 2e-23 Identities = 160/216 (74%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||||||||| || ||||| |||||||| ||||| || || |||| ||| || Sbjct 3925794 ACGAAGCACCAAATGGAGTGTGGACTCTTTTTGGATGTTGTAGTCAGCAAGTGTGTGACC 3925735 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTT-TGCTGATCCGGCGGAATACCCTCTT 29689 ||| || || || || ||| || | || || ||| ||||| ||||| || || || || | Sbjct 3925734 ATCCTCTAGCTGCTTACCACCAAAGAT-AAGCTTCTGCTGGTCCGGAGGGATTCCTTCCT 3925676 Query 29690 TGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 ||||||| ||| || | ||| || | || | ||| ||||| ||| || || | ||| Sbjct 3925675 TGTCTTG-AATCTTAGCTTTAACGTTGTCAATAGTATCAGAGCTTTCAACCTCCAAAGTG 3925617 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGC 29784 || |||||||| || || || || ||||| |||||| Sbjct 3925616 ATGGTTTTGCCTGTCAACGTCTTCACAAAGATCTGC 3925581 Score = 122 bits (134), Expect = 7e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 || || || ||||| || ||||| ||||| || || ||||| ||||| || | ||| ||| Sbjct 3925568 AACCGGAGAACCAAGTGGAGCGTTGATTCCTTCTGGATGTTGTAATCTGCCAAGGTACGA 3925509 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 |||| || || ||||| || || | || ||||||||||| ||| | ||||| | || Sbjct 3925508 CAATCTTCCAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCTGAGGAATGTCTTCC 3925449 Query 29689 TTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747 ||||| || ||| |||| || ||| | || | ||| ||||| |||| || ||||| Sbjct 3925448 TTGTCCTG-AATCTTTGCCTTAACATTGTCGATAGTATCAGAGCTCTCTATCTCGAGAGT 3925390 Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || |||||||| | ||||| || || || ||||| Sbjct 3925389 AATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 3925351 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||||||||| || || || || ||||| ||||| ||||| || | ||||| Sbjct 3926022 ACGAAGCACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGCGAGTGTGCGTCC 3925963 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || || || | | | || | ||| ||||| || || || || ||||| || Sbjct 3925962 ATCTTCGAGCTGCTTACCGGAAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCCTCCTT 3925903 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| | ||| || | |||||| | || | ||||| || || || || | ||| | Sbjct 3925902 GTCCT-CAATCTTCGCCTTGACATTATCGATTGTGTCTGAGCCCTCAACCTCCAAAGTAA 3925844 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || ||||| ||| || ||||| || ||||| Sbjct 3925843 TGGTCTTTCCAGTACGGGTCTTCACAAAAATTTGCAT 3925807 >seq1328 Length=1576597 Score = 109 bits (120), Expect = 4e-19 Identities = 155/214 (72%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || |||||||| || || |||||||| || | ||| || || |||| |||||| ||| Sbjct 273549 AGTACCAAATGCAGAGTTGATTCTTTCTGGACGTTGTAGTCAGCAAGAGTGCGACCATCC 273490 Query 29635 TCGAGTTGTTTGCCAGCATATATCAA-TCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || ||||||||||| | || || ||| || || || | | || || ||||| || Sbjct 273489 TCAAGATGTTTGCCAGCGAAGATAAAGTCTCTGTTGGTCTAGTTGGATTCCTTCTTTTTC 273430 Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 ||| ||| || | |||||| | || | |||| ||| || ||||| ||||| || | Sbjct 273429 TTG-AATCTTCGCCTTGACATTGTCAATGGTGTGAGAGCTCTCAACTTCTAGAGTAATGG 273371 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| ||||| | ||||| ||||| || ||||| Sbjct 273370 TTTTTCCAGTGAGGGTTTCCACAAACATTTGCAT 273337 Score = 105 bits (116), Expect = 5e-18 Identities = 159/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 29561 CTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAA 29620 |||| ||||| | || ||||| || || || || || |||||||| || | ||| || | Sbjct 273106 CTCCTCTCAACCTAAGAACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTTATCAGCCA 273047 Query 29621 TGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAA 29680 || || ||| || || ||||| || ||| | || | ||| ||||| ||||| || | Sbjct 273046 AAGTACGGCCATCTTCAAGCTGTTTACCGGCAAAAATAAGTCTCTGCTGGTCCGGAGGGA 272987 Query 29681 TACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTT 29740 | || || || ||||| | ||| || ||| | || | ||||| || ||| || | Sbjct 272986 TTCCTTCCTTATCTTGGATCTTTGCCTTAACATTGTCAATTGTGTCGGAGCTTTCAACCT 272927 Query 29741 CAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||||| || ||||| || | || || ||||| || ||||| Sbjct 272926 CAAGAGTTATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCAT 272881 >seq406 Length=3140938 Score = 105 bits (116), Expect = 5e-18 Identities = 114/150 (76%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 29549 TTTATCGTTGTCCT-CCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATG 29607 |||||| | |||| ||||| | | || ||||||||||| || || ||||| || ||| Sbjct 2970400 TTTATCATAGTCCCACCCCTAAGCCTCAAGACCAAATGAAGAGTCGACTCTTTCTGGATG 2970459 Query 29608 TTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGC 29667 || || ||||| | || ||| ||| || |||||||| |||||| |||||| || || Sbjct 2970460 TTGTAGTCCGCTAGTGTTCGACCATCTTCAAGTTGTTTACCAGCAAATATCAGCCTCTGT 2970519 Query 29668 TGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 ||||| || || || ||||||||||| ||| Sbjct 2970520 TGATCAGGTGGTATTCCCTCTTTGTCCTGT 2970549 >seq971 Length=4928269 Score = 104 bits (114), Expect = 2e-17 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| || || ||||| || ||||| |||||||| | ||| || ||| |||||||| Sbjct 3107476 ATGAAGAGTAGACTCTTTCTGGATGTTGTAATCCGCTAAGGTTCGGCCATCTTCGAGTTG 3107535 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 || |||||| |||||| ||||| ||||| || || |||||||||||||| ||| Sbjct 3107536 CTTACCAGCAAATATCAGCCTTTGTTGATCGGGTGGTATACCCTCTTTGTCCTGT 3107590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385210073194104