Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq3 145 9e-30 seq178 113 5e-20 >seq3 Length=3374423 Score = 145 bits (160), Expect = 9e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 ||| | |||||||| ||||| ||||| || || ||| | || ||||| || ||||||||| Sbjct 1010032 TACGTTCTTGATGCGGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGT 1009973 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 | ||||| | ||||||||||||| | | ||| |||| || |||||||||||| | Sbjct 1009972 TCTTGTTCGAGCTGTGCTGGTAAAGTTGCGTCTGGATCTGTTGACCAGTCTGACCAGAGT 1009913 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 ||||||||||||||||| ||| ||| ||| | | ||||| || || || || || Sbjct 1009912 TTCCTTGATGATGACCAGATTAATCAAGGGTTTGTTCTCACTTGTGTGGCTTATCCTACT 1009853 Query 138718 TCCGATTGTATAATTGAAACTGAAAAAGAGGACGA 138752 || ||| || |||||||| | ||||| ||||| Sbjct 1009852 TCTGATGTTACCATTGAAACCCACAAAGAAGACGA 1009818 >seq178 Length=2153606 Score = 113 bits (124), Expect = 5e-20 Identities = 133/176 (76%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 177914 CCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATC 177973 |||||| |||||||| || ||||| ||||||||| || | ||||||||||| || | Sbjct 356581 CCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAACTCCTGTTGCAGCTGCGAC 356640 Query 177974 C-GCAGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTT 178031 || || ||||| | ||||||| | || || || || || |||| ||||||||| Sbjct 356641 TTGCTGT-TTTCTTGATCTATCCAATTGGGCAGGGAAGTTTTTCTGATGGTATGCCTCTA 356699 Query 178032 GGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCT 178087 || |||||||||||||| |||| ||| ||||| |||| || || ||||| || || Sbjct 356700 GGAATCTCTGGTACTTTCAACTTTATGATTGTACTCCAGGCTGAGCACAACATTCT 356755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605652482287040