Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1690 311 6e-79 seq1502 221 9e-52 seq139 201 8e-46 seq861 192 4e-43 seq234 129 4e-24 seq1098 113 3e-19 seq1810 107 1e-17 seq410 102 6e-16 seq1340 87.8 1e-11 >seq1690 Length=820647 Score = 311 bits (344), Expect = 6e-79 Identities = 765/1146 (67%), Gaps = 18/1146 (2%) Strand=Plus/Minus Query 281329 AGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAAT 281388 ||||||| | ||| ||||||| | |||| ||| || | || | |||||| || Sbjct 130859 AGCTTCTTGCACCATCTTCTCAATCTCGTCTTTAGACAAACGACCCTTGTCATTAGTGAT 130800 Query 281389 AGTAATATTCTTGGATTTGTTTGTTGAT-TTATCAGCGGCAGTCACATTAAGAATACCAT 281447 || || || || ||||| | || | || || |||||| ||||| || ||||| | Sbjct 130799 TGTGATCTTGTTCT-TTTGTCCGGTGGTCTTGTCCTCGGCAGAGACATTTAGGATACCGT 130741 Query 281448 TGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCC 281507 |||| || | |||||| ||| || |||||||| || | |||| || ||||| | Sbjct 130740 TGGCGTCAATATCAAAGCAGACAGTGATCTGAGGGACACCGCGTGGAGCTGGAGGGATTC 130681 Query 281508 CTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGA 281567 | | | ||| | || || || || ||||| || || ||||| ||| Sbjct 130680 CAGAAAGCTCGAATTTACCGAGGAGGTTGTTGTCTTTGGTTCTAGCTCTCTCACCTTCGT 130621 Query 281568 AAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT- 281626 | | |||||| ||| | | ||||| ||||||||||| | || || ||| ||| Sbjct 130620 AGACTTGGATCAACACTCCGGGCTGATTGTCTGAATAAGTGGAGAAGAC-CTGTTCTTTC 130562 Query 281627 TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCT 281686 || ||||||||||||||||| | || | | ||||||| | ||||||||||||||| Sbjct 130561 TTGGTCGGAATTGTTGTGTTTCTTTGGATCAAAGTGGTCATGACACCACCAGCTGTTTCA 130502 Query 281687 AAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTT 281746 | ||| || || ||||| |||||||||| | || || | ||||| || |||| | Sbjct 130501 AGACCGAGTGAGAGAGGTGTGACATCAAGCAAGAGAAGGTCTTGAACCTTCTCATTTCCT 130442 Query 281747 TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTA 281806 | ||| ||||| || || |||| ||| |||||||||||||| || |||||||| ||| Sbjct 130441 TCACCGGTTAGAATTGCAGCCTGAACAGCTGCACCATATGCAACGGCCTCATCAGGGTTA 130382 Query 281807 ACAG--TTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAG 281864 | || || || || | ||| |||||||| |||| | ||||| ||| || || | Sbjct 130381 ATAGACTTGCA--GAGCTCTTTGCCATTGAAGAAATCTTGGAGAAGCTGTTGAACTTTGG 130324 Query 281865 GAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT-TTATCCAGTTTT 281923 | ||||| | || || || || | |||| ||||| | ||| | | || |||| || Sbjct 130323 GGATACGTGTAGAACCACCGACAAGAACAACATCATGGA-CTGAGCTCTTGTCCATCTTA 130265 Query 281924 GAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGT 281983 | ||| | | || ||||| || || | || ||||| | || ||| Sbjct 130264 GCATCACGGAGACACTTCTCAACAGGCTCCATACACTTCCTAAAGAGATCCATGTTAAGC 130205 Query 281984 TCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCA 282043 ||||||||| |||| | |||| | ||| | ||||||||||| |||| ||| ||| Sbjct 130204 TCTTCGAATCTAGCACGGGTAATTGGAGCATAGAAGTCAATTCCTTCAAACAGAGAGTCA 130145 Query 282044 ACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTC 282103 | || || || ||||| | | ||||| || | | || || | || || ||||| Sbjct 130144 ATCTCGATGGTCGTTTGCGCGGTGGAAGAAAGAGTTCTCTTTGCTCTCTCGCAAGCTGTT 130085 Query 282104 CTTAGTCTTCGTAAGGCT-TTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAA 282162 || | || | || ||| | | | | | | | ||| | || | || ||||| || Sbjct 130084 CTCAACCTCCTTAGAGCTCTCGGGTTACCG-CTAATATCCTTCTTGTTCTTCCTCTTAAA 130026 Query 282163 ATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATT 282222 |||| |||| | | || | | ||||||||||||||||| || | | ||||| Sbjct 130025 CTCTTGAACAAAGTGGTTAACCATTCTGTTATCAAAATCTTCACCACCAAGATGAGTATC 129966 Query 282223 TCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATG 282282 ||| | || || | || | || | || ||||||| | | ||||| ||||||| Sbjct 129965 TCCAGCTGTTGCCTTCACCTCAAAGATACCTTCTTCAATTGTAAGAAGAGAAACATCAAA 129906 Query 282283 GGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC-----TTGGTTT-TT 282336 || |||||||| | |||||| || || |||||| ||||| | ||| ||| || Sbjct 129905 AGTACCACCACCAAGATCAAAGATCAGAACATTCTTTTCTCCAACACTGGTTGCTTTCTT 129846 Query 282337 ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAG 282396 ||||||||||| |||| |||||||||||| || || || || || | || |||||| | Sbjct 129845 GTCAAGACCATAAGCAATAGCAGCAGCAGTCGGCTCGTTGATGATACGCATAACATTCAA 129786 Query 282397 ACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGG 282456 |||||| || || || || || || ||||| | || || || || || || ||||| Sbjct 129785 ACCAGCGATCACACCAGCGTCCTTTGTAGCTTGACGCTGAGAGTCATTGAAGTAAGCAGG 129726 Query 282457 AACAGT 282462 |||||| Sbjct 129725 AACAGT 129720 Score = 215 bits (238), Expect = 4e-50 Identities = 691/1060 (65%), Gaps = 18/1060 (2%) Strand=Plus/Minus Query 281424 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 281483 |||||| || ||||| ||||||||||| || | ||||| ||| || ||||||| Sbjct 124976 CGGCAGAGACGTTAAGGATACCATTGGCGTCAATGTCAAAGCAGACAGTGATCTGAGGGA 124917 Query 281484 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 281543 | || | |||| || ||||| || | | ||| | || ||| || || || | Sbjct 124916 CACCGCGAGGAGCTGGAGGGATTCCAGATAGCTCGAATTTACCGAGAAGGTTGTTGTCCT 124857 Query 281544 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAAT 281603 | || || ||||| ||| | | ||||| || ||| ||| || ||||| | Sbjct 124856 TGGTTCTGGCTCTCTCACCTTCGTACACCTGGATCAACACACCAGGTTGGTTGTCTGAGT 124797 Query 281604 AAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662 | || | || || ||| || || ||||| || |||||||| || | | || Sbjct 124796 AGGTGGAGAAGAC-CTGTTCCTTCTTGGTTGGAATGGTCGTGTTTCTCGGGATCAAAGTG 124738 Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | |||||| || ||||| | |||||| || |||||||||||||| | | | | Sbjct 124737 GTCATGACACCACCGGCAGTTTCCAGACCAAGGGAGAGAGGAGTGACATCGAGCAATAGA 124678 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || ||| | || || | || ||| ||||||||| | || | ||||||||| Sbjct 124677 AGATCTTGGACCTTCTCGTTTCCTTCACCGCTGAGAATAGCTCCCTGGACAGCAGCACCG 124618 Query 281783 TATGCAACAGCTTCATCAGGATTAACAG--TTTCATTTAGTTTTTTACCATTGAAAAAAT 281840 || |||||||| |||||||| |||| || || || || | ||| || ||||| || | Sbjct 124617 TAGGCAACAGCCTCATCAGGGTTAATAGACTTGCAA--AGCTCTTTGCCGTTGAAGAAGT 124560 Query 281841 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 281900 ||| | ||| |||||||| ||||| | || || ||||| | |||| || | Sbjct 124559 CCTGAAGCAATTGCTGAACCTTAGGGATACGGGTGGAACCACCAACAAGGACAACATCGT 124500 Query 281901 GCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCA 281959 | || ||| | || |||| || | ||| | | || ||||| || || | || Sbjct 124499 GGACA-GTGCTCTTGTCCATCTTAGCATCACGGAGACACTTCTCAACTGGCTCCATACAC 124441 Query 281960 GCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA 282019 ||| |||| || || || || ||| |||| | || | ||| | || || Sbjct 124440 TTTCTGAACAGATCCATGTTGAGCTCCTCAAATCTAGCACGGGTGATGGTGG-AGTAGAA 124382 Query 282020 -TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGC 282078 ||||| || ||| | | |||||| | ||||| || || |||| | || || || | Sbjct 124381 GTCAATACCCTCGTAGAGAGAATCGATCTCAATGGTGGTCTGAGCGGTGGAGGAAAGAGT 124322 Query 282079 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAG-GCTTTTGCTGATTGATTCA 282137 | || || | ||||| || || || | || | |||| ||| ||| | | | | Sbjct 124321 CCTCTTCGCTCTCTCACAGGCAGTTCTCAACCTCC-TAAGAGCTCTTGGGTTTCCAGTAA 124263 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 282197 || | || || |||||||| |||| ||| | | || | | || |||| Sbjct 124262 TGTCCTTCTTGCTCTTCCTCTTGAACTCTTGAACGAAGTGGTTAACCATTCTGTTGTCAA 124203 Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257 |||||||||| || | | ||| | ||| | || || | || | ||| | || |||| Sbjct 124202 AATCTTCACCACCAAGATGAGTGTCTCCAGCGGTTGCCTTAACCTCGAAGATACCTTCTT 124143 Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317 ||| | | ||||| |||||| || ||||| || | |||||| || | || ||| Sbjct 124142 CAATGGTAAGAAGAGAGACATCAAAAGTACCACCTCCAAGATCAAAGATCAACACGTTCT 124083 Query 282318 TTTCT------TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 282371 | ||| || | || || |||||||| || |||| ||||||||| || || | Sbjct 124082 TCTCTCCAACGCTGGTTGCCTTCTTGTCAAGACCGTAGGCAATAGCAGCAGCTGTCGGCT 124023 Query 282372 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 282431 |||| || ||||||| ||| || | ||||||||| ||| ||||| || |||||||| | Sbjct 124022 CATTGATGATTCTCATAACGTTTAAACCAGCAATAACTCCAGCATCCTTTGTGGCTTGAC 123963 Query 282432 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 || || || || || || |||||||| || | |||||| Sbjct 123962 GCTGAGAGTCATTGAAGTAAGCAGGAACGGTGACAACGGC 123923 >seq1502 Length=857606 Score = 221 bits (244), Expect = 9e-52 Identities = 699/1065 (66%), Gaps = 24/1065 (2%) Strand=Plus/Plus Query 281424 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 281483 |||| | |||||| || ||||||||||| || | || || ||| |||||| || | Sbjct 103301 CGGCCGACACATTCAGGATACCATTGGCGTCAATGTCGAAACAGACAGTAATTTGCGGAA 103360 Query 281484 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 281543 | |||| |||||||||| || || | | ||| |||||| | || || || | Sbjct 103361 CACCTCGTGGAGCAGGTGGTATACCGCTGAGCTCGAATTTTCCCAAAAGGTTGTTGTCCT 103420 Query 281544 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAA 281602 | || | || || || ||| | | ||||| |||| | | | || || |||||| Sbjct 103421 TTGTCCTTGCTCTCTCCCCTTCGTAGACCTGGATCAGTA-CACCGGGCTGGTTGTCTGAA 103479 Query 281603 TAAGTTGTAAATACTCTGGATTTTTTACAA-GGAATTGTTGTGTTTCTATCAATAATATT 281661 || || | |||| |||| ||| | | |||||||||||||| || ||| | Sbjct 103480 TAGGTAGAGAATA-TCTGCTCTTTCTTCGTCGGAATTGTTGTGTTCCTCGGAATCAGGAC 103538 Query 281662 GGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGAC 281721 ||||||| ||||| || ||||| ||||| | ||||||||||| ||||||| || | Sbjct 103539 AGTCATAACCCCACCGGCGGTTTCCAAACCCAAGGAAAGAGGAGTCACATCAAGAAGTAA 103598 Query 281722 AATATTTTGAAGTTTTTCATCAGTTTGACC-AACAAGAATAGCTGCTTGAATAGCAGCAC 281780 | | ||| | || || | || ||| |||| || || ||||||| ||| || | Sbjct 103599 CAAGTCTTGGACCTTCTCGTTCCCTTCACCGCTCAAG-ATTGCAGCTTGAACAGCTGCTC 103657 Query 281781 CATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 281840 | || |||||||| || || || |||| ||| | || | ||| |||||||| || | Sbjct 103658 CGTAGGCAACAGCCTCGTCCGGGTTAATGCTTTTACAGAGCTCTTTCCCATTGAAGAAGT 103717 Query 281841 -TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 281899 ||| || ||| || || ||||| || | | || || ||||| | |||| ||| Sbjct 103718 CTTGCAA-AAGCTGCTGCACTTTAGGGATCCTTGTAGAGCCACCAACAAGGACAACATCA 103776 Query 281900 TGCAC-CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 281958 || || |||| || |||| || | ||| ||| || || || ||||| | || Sbjct 103777 TGGACGCTGT-TCTTGTCCATCTTAGCATCTCTCAAACACTTCTCCACTGGTTCCATACA 103835 Query 281959 AGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATA 282018 |||||||| || || || |||||| |||| | ||| | || | | Sbjct 103836 CTTCCTAAACAAATCCATGTTGAGCTCCTCGAATCTAGCACGAGTGATGGTTGTGTAGAA 103895 Query 282019 ATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGC 282078 |||||| || ||| | | ||| || | |||||| || || |||| | ||||| || | Sbjct 103896 ATCAATACCCTCGTAGAGAGAGTCGATTTCAATAGTTGTCTGAGCAGTCGAAGAAAGGGT 103955 Query 282079 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT--GATTC 282136 | || || || ||||| |||||||| || || | || ||| ||| | || | | Sbjct 103956 TCTCTTCGCCCGCTCACAAGCTGTCCTAAGCCTCCTCAAAGCTCTTG--GGTTACCAGTG 104013 Query 282137 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTAT 282194 | ||| | || | || ||||| || || | |||| | ||| | || | | || | Sbjct 104014 ATATCCTTCTTGTTCTTCCTCTTAAACTCCTGAACAAA--ATGATTAACCATTCTGTTGT 104071 Query 282195 CAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCAT 282254 ||||||| ||||| || | | || | || | ||| | | || | || | || | Sbjct 104072 CAAAATCCTCACCGCCAAGATGCGTGTCACCAGCCGTGGACTTCACCTCAAAGATACCTT 104131 Query 282255 CTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT 282314 | |||| | | | || |||||| || ||||| |||| |||||| ||||| |||| Sbjct 104132 CCTCAATCGTAAGCAAAGACACATCAAAAGTACCACCTCCCAAATCAAAGATAAGAACAT 104191 Query 282315 TCATTT--CTTTGTCTTG----GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 282368 || | | | || | ||||| ||||||||||| |||| ||||||||||||| Sbjct 104192 TCTTCTCGCCAACACTCGACGCCTTTTTGTCAAGACCATAAGCAATTGCAGCAGCAGTTG 104251 Query 282369 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 282428 | ||||| || || | || ||||| ||||||| || ||| ||||| || || || | Sbjct 104252 GCTCATTGATGATACGCATCACATTGAGACCAGAGATAACTCCAGCATCCTTTGTCGCCT 104311 Query 282429 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 | | || ||||| || ||||| ||||| || |||| || |||| Sbjct 104312 GACGCTGAGAATCATTGAAATAAGCAGGTACGGTAACCACAGCAT 104356 >seq139 Length=5440 Score = 201 bits (222), Expect = 8e-46 Identities = 946/1485 (64%), Gaps = 33/1485 (2%) Strand=Plus/Plus Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475 |||||| | || | |||||| | || ||||| ||||| | ||||| || | || Sbjct 2025 TTTATCCTCCGCCGACACATTTAAGATCCCATTTGCATCGATGTCAAAGCAAACATTGAT 2084 Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535 |||||| || || | | ||||| || || || | | | || ||||| ||| || Sbjct 2085 TTGAGGAACTCCACGTGGGGCAGGAGGAATGCCCTTGAGCTCGAAGGTTCCAAGAAGGTT 2144 Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 281595 || ||||| || ||||| || || | | |||||| ||| | | ||||| Sbjct 2145 GTTGTCTTTGGTCCTCGCACGTTCTCCTTCATAGACTTGGATCAGAACGCCTGGCTGATT 2204 Query 281596 ATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAAT 281655 || | ||| || | || ||| || |||||||||| || || ||||| || Sbjct 2205 GTCCGCATACGTGGAGAACACTTGCTCCTTCTTACAAGGAACCGTCGTATTTCTCGGGAT 2264 Query 281656 AATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAAC 281715 | ||||| | ||||| ||||| || | |||||| || || || ||||||| Sbjct 2265 TAACACAGTCATCACCCCACCGGCTGTCTCAATTCCAAGACTTAGCGGCGTAACATCAAG 2324 Query 281716 TAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGC 281775 || | | | ||| | || ||| || |||| ||| || || || |||| || Sbjct 2325 AAGCAAGAGGTCTTGGACCTTGTCACTTCCTTCACCAGTAAGGATCGCAGCCTGAACCGC 2384 Query 281776 AGCACCATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTG 281833 ||| ||||||||||| ||||||||||| || | | || ||| || | || || ||| Sbjct 2385 AGCTCCATATGCAACGGCTTCATCAGGGTTTATGCTCTTGCAT--AGCTCCTTCCCGTTG 2442 Query 281834 AAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATAC 281892 || |||| ||| || ||| || | || ||||| | | |||||||| || | || Sbjct 2443 AAGAAATCTTGTAA-AAGCTGCTGAATTTTCGGAATCCTCGTCGATCCTCCGACCAGAAC 2501 Query 281893 AATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTC 281952 | || |||||| | | || || || || | || | |||||| || || || || Sbjct 2502 CACCTCGTGCACCCGGGCCTTGTCGAGCTTCGCGTCTTTAAGAACTTTCTCTACAGGATC 2561 Query 281953 AAGACCAGCTCTAAACAAGTC--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGA--G 282008 | || || ||||| || || || || || || | || | || ||| | Sbjct 2562 CATACATTTCCTGAACAAATCCATGTTCATC--TCCTCAAACCTCGCAC--GTGAGATCG 2617 Query 282009 TGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAG 282068 | ||| | ||||| || || ||| ||||||| ||||| || || |||| | | Sbjct 2618 TCGCATAGAAGTCAATACCCTCATGCAACGAATCAATCTCAATAGTCGTCTGAGCTGTGG 2677 Query 282069 AAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTG 282128 | || || | | || || | ||||| || ||||| | || || | || | || Sbjct 2678 ATGAAAGCGTTCTCTTTGCTCTCTCACAAGCCGTCCTCAACCTCCGAAGTGCCCTCGC-- 2735 Query 282129 ATTGATTCAAATCTGTTT--TATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACA 282184 ||| | ||| | || | | ||| ||||| || || |||| | ||| | ||| Sbjct 2736 ATTCCCACCAATATCCTTCTTGTGTTTCCTCTTAAACTCCGCAACGAA--ATGGTTCACA 2793 Query 282185 AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGG 282244 || | || ||||| |||||||| || | | ||||| ||| | || ||| | |||| Sbjct 2794 AGTCTGTTGTCAAAGTCTTCACCACCAAGATGAGTATCTCCGGCAGTGGCTTTCACTTCA 2853 Query 282245 AAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAA 282304 |||| || ||||||| | ||| || | ||||||| ||||||||||| | ||| ||| Sbjct 2854 AAAACACCTTCTTCAATCGTCAACAGCGAAACATCAAACGTTCCACCACCGAGATCGAAA 2913 Query 282305 ATAAGTACATTCATTTCTTTG-TCTTGGT-----TTTTATCAAGACCATACGCAAAAGCA 282358 || | | ||| | || | |||| || | || || ||||| || || | ||| Sbjct 2914 ATCAAAATGTTCCTCTCACCGGTCTTCGTGCCCTTCTTGTCCAGACCGTAAGCTATAGCT 2973 Query 282359 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 282418 |||||||| || ||||| || || | ||||||||| || |||| ||| ||| || || Sbjct 2974 GCAGCAGTCGGCTCATTGATGATCCGCAAAACATTGAGCCCAGAAATAGCTCCAGCGTCC 3033 Query 282419 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT 282478 || || || ||||| || ||||||||||| || || || || |||| ||||| | | | Sbjct 3034 TTCGTAGCCTGTCTCTGAGAATCGTTAAAGTACGCCGGGACCGTAACGACGGCGTTTTTA 3093 Query 282479 ACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAA 282538 || | |||| ||| || || |||| || || | ||| || || Sbjct 3094 ACAGTGTGACCAAGGAAAGACTCAGCGACTTCCCTCATCTTCACCAACACCATGGAAGAT 3153 Query 282539 ATTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTA 282598 || | || ||||| || |||| ||| || | || || || | | || ||| Sbjct 3154 ATCTCCTCAGGAGAGAATCGCTTCTCTTCGTTCTTGTACGAGACGACTATCATCGGCTTA 3213 Query 282599 TTACC---AACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGG 282655 | || | | || |||||| || ||||| | | |||||| || ||| | Sbjct 3214 TCTCCGGGACCTGAAACAACTTTGAACGGCCAGTGTCGCATATCACTCTGTACAGAAGGA 3273 Query 282656 TCATTAAAATCT-CTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAAC 282714 ||| | ||||| || || || | ||||| ||||| || | ||| || || || | Sbjct 3274 TCA-GAGAATCTCCTTCCGATAAGACGTTTCGCATCGAAGACAGTGTTCTGAGGGTTCAA 3332 Query 282715 TGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATA 282774 || |||||| || || || ||||| |||| | || || || || || | || || Sbjct 3333 CGCCACTTGATTCTTCGCCGCGTCTCCGATCATTCGCTCGGTGTCAGTGAAGGCGACGTA 3392 Query 282775 TGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCA 282834 ||||| || || || || || ||||| || | ||| || || || | | || ||| Sbjct 3393 CGATGGTGTCGTACGGTTTCCCTGATCGTTAGGAATGATCTCCACACGATCGTTCATCCA 3452 Query 282835 TACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 || || |||||||| | || || || | ||| || |||||||| Sbjct 3453 AACTCCAACACAACTGTATGTAGTGCCGAGATCGATGCCAATAGC 3497 >seq861 Length=1651656 Score = 192 bits (212), Expect = 4e-43 Identities = 742/1155 (64%), Gaps = 18/1155 (2%) Strand=Plus/Minus Query 281329 AGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAAT 281388 ||||||| || |||||||||||| | || | || |||||||| | || || || Sbjct 577472 AGCTTCTTGAACCATTCTCTCAATCTCGTCCTTTGACAATCTTCCTTTGTCGTTGGTGAT 577413 Query 281389 AGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATT 281448 || || || || || |||| || || | || | || || || ||||| || Sbjct 577412 TGTGATCTTGTTCTTTTGCCCCGTTGTCTTGTCCTCAGCTGAGACGTTGAGGATACCGTT 577353 Query 281449 GGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCC 281508 ||||| | || || ||| |||||||| || ||||| |||| || ||||| || Sbjct 577352 CGCATCAATGTCGAAACAGACAGTGATTTGAGGAACACCTCTTGGAGCTGGAGGGATACC 577293 Query 281509 TTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAA 281568 | | ||| | |||| | || || ||||| || | || || || || | Sbjct 577292 GGAAAGCTCGAATTTACCCAAAAGGTTGTTGTCTTTGGTTCTTGCTCTCTCGCCTTCATA 577233 Query 281569 AATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTT 281628 | |||||| || | | ||| || ||||||||||||| || ||| || || Sbjct 577232 GACTTGGATCAAGACACCGGGTTGGTTGTCTGAATAAGTTGAGAAGACTTGTTCCTTCTT 577173 Query 281629 ACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAA 281688 || || ||||| ||||| | || | ||||| | || ||||| ||||| | Sbjct 577172 TGTGGGGATGGTTGTATTTCTCTGGATCAAGACAGTCATGACTCCTCCAGCGGTTTCAAG 577113 Query 281689 ACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTG 281748 ||| |||||||| || |||||||| | | || | || ||||| || || | | | Sbjct 577112 ACCGAGAGAAAGTGGTGTGACATCGAGCAAGAGGAGATCTTGAACCTTCTCGTTACCCTC 577053 Query 281749 ACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAAC 281808 ||| ||||||||||| || | ||| ||||| ||||||||||| ||||| || || | Sbjct 577052 ACCGCTGAGAATAGCTGCCTGGACAGCTGCACCGTATGCAACAGCCTCATCGGGGTTGAT 576993 Query 281809 AGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAAT 281868 | || |||| || |||||||| || | | || | |||| ||||| || || Sbjct 576992 GGATTTGCAAAGTTCCTTGCCATTGAAGAAGTCTAGGAGCAATTGTTGGACCTTGGGGAT 576933 Query 281869 ACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT-TTATCCAGTTTTGAAT 281927 ||| | ||| || ||||| | |||| |||| | ||| | | || |||| || | || Sbjct 576932 ACGGGTTGAGCCACCAACAAGGACAACATCAT-CGACTGAGTTCTTGTCCATCTTAGCAT 576874 Query 281928 CCAATAAAAC-TTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCT 281986 || || || || ||||| || || | || ||| || | || ||| || Sbjct 576873 -CACGAAGACACTTCTCAACAGGCTCCATACACTTTCTGAAAAGATCCATGTTAAGCTCC 576815 Query 281987 TCGAATTTAGCTCTAGTAAGAGTGACATTATAA-TCAATTCCTTCGAACAAAGAATCAAC 282045 |||||| | || | || | | || | || || |||| || ||| | | ||| || | Sbjct 576814 TCGAATCTGGCACGGGTGATTG-GAGAGTAGAAGTCAACACCCTCGTATAGAGAGTCGAT 576756 Query 282046 TTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCT 282105 ||| || ||||| |||| || ||| || || | | || || | ||||| || || || Sbjct 576755 TTCGATGGTAGTCTGAGCCGTAGAGGAGAGAGTCCTCTTCGCTCTCTCACAGGCAGTTCT 576696 Query 282106 TAGTCTTCGTAAGGCTTTTGCTGATT--GATTCAAATCTGTTTTATATTTTCTCTTGAAA 282163 | || | || ||| | | | || | | || | || | ||||||||||| Sbjct 576695 CAACCTCCTTAGAGCTCT--CGGGTTCCCGCTGATGTCCTTCTTGTTCTTTCTCTTGAAC 576638 Query 282164 TCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTT 282223 |||| ||| | | || | | || || ||||| ||||| || | | ||| | | Sbjct 576637 TCTTGGACAAAGTGGTTCACCATTCTGTTGTCGAAATCCTCACCACCAAGATGAGTGTCT 576578 Query 282224 CCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGG 282283 || | || || | |||| || | || ||||||| | | ||||| |||||| Sbjct 576577 CCAGCAGTCGCCTTCACTTCAAAGATACCTTCTTCAATGGTGAGAAGAGAGACATCAAAT 576518 Query 282284 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTC-------TTTGTCTTGGTTTTT 282336 || |||||||| | ||||| || | |||||| | || ||||| || || Sbjct 576517 GTACCACCACCAAGGTCAAAGATCAAAACATTCTTCTCCCCAACACTTGTC-GCCTTCTT 576459 Query 282337 ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAG 282396 || |||||||| |||| |||||| ||||| || ||||| || || | || |||||| | Sbjct 576458 GTCTAGACCATAAGCAATAGCAGCTGCAGTAGGCTCATTGATGATACGCATAACATTCAA 576399 Query 282397 ACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGG 282456 ||||||||| || ||||| || || || || | || || || || || || || || Sbjct 576398 ACCAGCAATGACACCAGCATCCTTCGTTGCCTGACGCTGAGAGTCATTGAAGTAAGCTGG 576339 Query 282457 AACAGTAATAACGGC 282471 |||||| | ||| || Sbjct 576338 AACAGTTACAACAGC 576324 >seq234 Length=2418110 Score = 129 bits (142), Expect = 4e-24 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | ||||||||| || |||||||| || |||||| ||||| ||||||||| Sbjct 146783 CCATAGGATAGAGCAGCAGCCGTAGGTTCATTTATGATTCTCTCAACATCGAGACCAGCA 146842 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||||| || |||||||| || ||||| || || | ||| ||||| || || |||||||| Sbjct 146843 ATTCTCCCGGCATCTTTTGTTGCTTGCCTCTGAGCATCATTAAAGTAAGCTGGAACAGTG 146902 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTT 282519 | ||| || | | ||| |||||||| ||||| |||||| | |||||| || Sbjct 146903 ACAACAGCCTTCTTGACTGATTTTCCAAGGTAAGCTTCTGCTGTCTCTTTCATCTT 146958 >seq1098 Length=1074956 Score = 113 bits (124), Expect = 3e-19 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 282343 ACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGC 282402 |||||| | | |||||||| || ||||| || || || ||| |||| ||||||||| Sbjct 988112 ACCATATGATAGTGCAGCAGCTGTAGGTTCGTTGATGATCCTCTGGACATCAAGACCAGC 988053 Query 282403 AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 282462 |||| | || ||||| || ||||||||||| |||| ||| || ||||| || |||||||| Sbjct 988052 AATTTTCCCAGCATCCTTTGTGGCTTGTCTCTGTGCATCATTGAAATAAGCTGGAACAGT 987993 Query 282463 AATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTT 282519 || ||| || | || | ||| || | ||||| ||||||| |||||||| Sbjct 987992 AACAACAGCTTTGGTGATAGATTTCCCGAGGTAAGCTTCAGCTGTTTCCTTCATTTT 987936 Score = 93.3 bits (102), Expect = 3e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 86118 ACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGC 86177 ||| |||| || || || || || ||||| || || || | | ||||| | ||| || Sbjct 988112 ACCATATGATAGTGCAGCAGCTGTAGGTTCGTTGATGATCCTCTGGACATCAAGACCAGC 988053 Query 86178 AATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGT 86237 |||||| ||| ||| || |||||||||||||| ||||| ||||| ||||| ||||| Sbjct 988052 AATTTTCCCAGCATCCTTTGTGGCTTGTCTCTGTGCATCATTGAAATAAGCTGGAACAGT 987993 Query 86238 AATAACTGCTTTATTAATAGGTTT 86261 || ||| ||||| | |||| ||| Sbjct 987992 AACAACAGCTTTGGTGATAGATTT 987969 >seq1810 Length=8348134 Score = 107 bits (118), Expect = 1e-17 Identities = 151/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 282274 AACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT 282333 ||||||| ||| |||||||| | |||||| | || | | |||| ||| ||| || Sbjct 1313622 AACATCAAAGGTACCACCACCAAGATCAAAGACTAGGA---TTGTTTCATTG-CTT--TT 1313569 Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 | | |||| ||||| || || | |||||| || || ||||| ||||| | | ||| | Sbjct 1313568 TCTGTCAAACCCATAAGCCAATGAAGCAGCTGTGGGCTCATTGATAATACGAAGAACTTC 1313509 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 | |||||||||| || |||||||| || ||| || ||||||||||| || || || Sbjct 1313508 CAACCCAGCAATTCGACCAGCATCTTTTGTAGCTGTCCTCTGTGAATCGTTGAAGTAAGC 1313449 Query 282454 AGGAACAGTAATAACGGCATCTGTTACTT 282482 ||| ||||| || || || | ||||||| Sbjct 1313448 AGGCACAGTGATGACAGCCTTGGTTACTT 1313420 >seq410 Length=3326409 Score = 102 bits (112), Expect = 6e-16 Identities = 149/208 (72%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 ||||| ||| |||||||| | |||||| | ||| | | | ||| ||| ||| ||| Sbjct 1553130 ACATCGAAGGTACCACCACCAAGATCAAAGACAAGAATAGT---TTCATTG-CTT--TTT 1553077 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 | |||| ||||| || || | ||||||||| || ||||| || || | | ||| | Sbjct 1553076 CTCTCAAACCCATAAGCCAAGGAAGCAGCAGTAGGCTCATTGATGATACGAAGAACTTCT 1553017 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 | |||||||| | || |||||||| || ||| ||||||||||| || || || ||| Sbjct 1553016 AATCCAGCAATACGGCCAGCATCTTTTGTAGCTGTCCTTTGTGAATCATTGAAGTAAGCA 1552957 Query 282455 GGAACAGTAATAACGGCATCTGTTACTT 282482 || ||||| || || || | ||||||| Sbjct 1552956 GGCACAGTGATGACTGCTTTAGTTACTT 1552929 >seq1340 Length=1566820 Score = 87.8 bits (96), Expect = 1e-11 Identities = 142/204 (70%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 ||||| |||| | ||| | | | |||||| ||| |||||||| | ||||| | || Sbjct 236235 TCCATTATCAATGGTCAAGACACTGACATCAAAGGTACCACCACCAAGGTCAAAGACGAG 236294 Query 282310 TACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 282369 | ||| | || | | | |||||||||||||| |||| ||||||||| || || Sbjct 236295 GATGTTCTTCTCACCACCCT---TCTTATCAAGACCATAGGCAATAGCAGCAGCGGTGGG 236351 Query 282370 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 282429 ||| || || ||||| |||||| || ||||| || || ||||| || ||||| || Sbjct 236352 TTCGTTGATGATTCTAGCAACATTGAGCCCAGCGATAACACCAGCATCCTTTGTGGCCTG 236411 Query 282430 TCTTTGTGAATCGTTAAAATATGC 282453 || || | ||| || || || || Sbjct 236412 CCTCTGGGCATCATTGAAGTAAGC 236435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740534957815344