Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_024486.1 Length=43734 Score E Sequences producing significant alignments: (Bits) Value seq608 84.2 6e-12 >seq608 Length=2187891 Score = 84.2 bits (92), Expect = 6e-12 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 1376 TTACGGCAGAATAGCTCCAAGATCCGGTCTAGCGGCAAAGTATTCAATTGATGTGGGCGC 1435 ||||| ||||| || || ||||| ||| | || || |||| |||||||| || || Sbjct 1512837 TTACGCGAGAATCGCACCGAGATCTGGTTTGGCTTGGAAACATTCGATTGATGTTGGAGC 1512896 Query 1436 TGGAGTTATTGACCCTGATTATCGTGGAAGTATCAGTGTTGTTTTATTTAATCATTCGGA 1495 |||||| ||||| ||||||| | ||| | | |||| |||| ||||||||||| || Sbjct 1512897 TGGAGTGATTGATGCTGATTACAGAGGACCTGTTGGTGTGATTTTGTTTAATCATTCTGA 1512956 Query 1496 TGTGCCTTTCCATGTGTCGAGGGGAGACAGAATAGCTCAGTTAATT 1541 ||| ||| |||| | |||||| |||| || || || ||| Sbjct 1512957 TGTTGATTTTGATGTCAAGTTGGGAGATCGAATCGCGCAATTGATT 1513002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139823972089088