Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1396 136 4e-27 seq1177 109 5e-19 seq1125 107 2e-18 seq236 98.7 1e-15 seq793 96.9 3e-15 seq1208 91.5 1e-13 >seq1396 Length=1446835 Score = 136 bits (150), Expect = 4e-27 Identities = 156/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| || || ||||| || ||||| || ||| ||| ||| ||||||||| Sbjct 401038 AAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGACC-GTCCTCGAG 400980 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || ||| | ||||| ||||||||||| |||||||| ||||||||||| ||| Sbjct 400979 CTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGAT 400920 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | |||| ||||||| | |||||| || | |||| ||| || || Sbjct 400919 CTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTTCCC 400860 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| | ||| || |||||||||||||| Sbjct 400859 GGTTAAAGTCTTCACGAAAATCTGCAT 400833 Score = 134 bits (148), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || || || || ||| ||| ||| | ||||| || Sbjct 400810 AAGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCAGCCAAAGTGCGACCA-TCCTCAAG 400752 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| ||||| ||| | ||||| ||||||||||| ||||| || ||||||||||| ||| Sbjct 400751 CTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGAT 400692 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | |||| ||||| | | |||||| || | ||||| |||||||| Sbjct 400691 CTTAGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCCACCTCCAAGGTGATAGTTTTGCC 400632 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||| ||| || ||||| ||||||||| Sbjct 400631 AGTCAAAGTCTTGACGAAGATCTGCATG 400604 Score = 127 bits (140), Expect = 2e-24 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT-GGACGAGTCCTCGAG 133513 ||||| | |||||| || ||||| ||||||||||| ||| ||| | | | ||||| || Sbjct 399898 AAATGGAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAACGTACGGCCA-TCCTCTAG 399840 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | || |||| |||||| || ||||| ||||| |||||||| ||| Sbjct 399839 CTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTGGAT 399780 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 | || |||| | | | || | ||||| | | ||||| |||| ||||| || || | Sbjct 399779 C-TTGGCTTTAACGTTGTCGATTGTGTCAGAGCTTTCCACCTCGAGGGTGATAGTCTTTC 399721 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||||| || ||||| |||||||| Sbjct 399720 CGGTGAGAGTCTTAACGAAGATCTGCAT 399693 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||||||||| || |||||||| ||| || ||| | ||||| | Sbjct 400582 AAGTGAAGGGTTGACTCTTTCTGGATGTTGTAATCCGCCAAGGTACGACCA-TCCTCCAA 400524 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || | || ||||||||| |||||||| |||||||| || || Sbjct 400523 CTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTATCCTGAAT 400464 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | || | ||||| | | |||||| || | ||||| ||| || || Sbjct 400463 CTTGGCCTTCACGTTGTCGATGGTGTCTGAGCTCTCCACCTCCAAGGTGATGGTCTTTCC 400404 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || |||||||||||||| Sbjct 400403 AGTGAGAGTCTTGACGAAAATCTGCAT 400377 >seq1177 Length=2734319 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| || |||||||| || ||||||||| ||| ||| | | | || || || Sbjct 987932 AAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCA-TCTTCTAG 987874 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || ||| | || | | |||||||| ||||| |||||||||||||| ||| Sbjct 987873 CTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGAT 987814 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| ||| | | || | ||||||| | ||| || || | |||| ||| || || Sbjct 987813 CTTTGCCTTAACATTGTCGATGGTGTCGGAGCTCTCGACCTCAAGAGTGATGGTCTTACC 987754 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||| ||||| Sbjct 987753 AGTTAGTGTTTTCACGAAAATTTGCAT 987727 >seq1125 Length=2998257 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || || ||||| || ||||| ||| | | || ||| ||||||||||| || Sbjct 292779 GTTGATTCCTTCTGGATGTTGTAGTCGGCTAAGGTTCGTCCGTCTTCGAGCTGCTTTCCG 292838 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| |||| | ||||||||||| || ||||| ||||||||||| |||||| |||| Sbjct 292839 GCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTG 292898 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||| | | ||| || |||| ||||| || || || || || ||| Sbjct 292899 ACATTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTT 292958 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 292959 TTCACGAAGATCTGCAT 292975 >seq236 Length=1640546 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || || ||||| || ||||| ||| | | ||| ||| |||||||| || || Sbjct 1089231 GTTGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCGAGCTGTTTCCCG 1089172 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| |||| | ||||||||||| || ||||| ||||||||||| |||||| || Sbjct 1089171 GCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTC 1089112 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||| | || ||| || || | ||| | ||| || || || || ||| Sbjct 1089111 ACATTGTCGATGGTGTCTGAGGACTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTT 1089052 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 1089051 TTCACGAAGATCTGCAT 1089035 >seq793 Length=772624 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || |||||||| || || | ||||||| |||||||| |||||||| |||||||| Sbjct 611090 GTCTTCAAGCTGCTTACCGGCAAAGATGAGCCTTTGCTGGTCCGGAGGGATTCCTTCCTT 611031 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||||||| |||| | |||| || || | | ||| || || | || | Sbjct 611030 GTCCTGGATCTTTGCTTTGACGTTGTCAATAGTATCAGAGCTCTCAACCTCCAAAGTAAT 610971 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| || || || |||||||| Sbjct 610970 GGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 610935 >seq1208 Length=4595443 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||||||||| || || ||||| || | | ||| ||| | ||||| || Sbjct 3925784 AAATGGAGTGTGGACTCTTTTTGGATGTTGTAGTCAGCAAGTGTGTGACCA-TCCTCTAG 3925726 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || | | || ||| ||||||||| |||||||| ||||||||||| ||| Sbjct 3925725 CTGCTTACCACCAAAGATAAGCTTCTGCTGGTCCGGAGGGATTCCTTCCTTGTC-TTGAA 3925667 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 || |||| | | | |||| || || | | || || || | |||| |||||||| Sbjct 3925666 TCTTAGCTTTAACGTTGTCAATAGTATCAGAGCTTTCAACCTCCAAAGTGATGGTTTTGC 3925607 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGC 133658 | |||| || || || || |||||| Sbjct 3925606 CTGTCAACGTCTTCACAAAGATCTGC 3925581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483409052874560