Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1639 91.5 3e-13 >seq1639 Length=5101707 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/189 (72%), Gaps = 7/189 (4%) Strand=Plus/Minus Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTT-CTACAAG 131859 |||||||| | ||||| || |||||||| | | ||| | | || || || | | Sbjct 2279956 AAGAAAGCTCAGTGGGCGATGAAATGGATCGACG--GAT--CTCAAACCTTCGCTGAACG 2279901 Query 131860 ACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGT-GCTTTCTGTGCTATCT 131918 | |||||||||| |||||||||||||| || ||||| || || ||||| || | |||| Sbjct 2279900 AATTGTAGCTTTCGCTTGTGTTGAAGGCATCTTCTTCTCTGGAAGCTTT-TGCTCCATCT 2279842 Query 131919 TTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGA 131978 | ||||||||||| || || | |||||||| | | || || || |||| ||||| Sbjct 2279841 TCTGGCTTAAGAAACGAGGTCTCATGCCTGGGTTAACTTTCTCAAACGAATTGATCTCAC 2279782 Query 131979 GAGATGAAG 131987 |||| |||| Sbjct 2279781 GAGACGAAG 2279773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186783239460184