Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq204 152 3e-32 seq236 102 5e-17 seq1177 91.5 1e-13 seq1208 89.7 3e-13 seq1125 82.4 5e-11 >seq204 Length=2333866 Score = 152 bits (168), Expect = 3e-32 Identities = 177/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| ||||| | ||| | ||||||||| ||||| ||||| || ||||||||||||| Sbjct 1139364 CACCTCCTCTAAGACGAAGCACCAAATGAAGAGTTGATTCTTTCTGGATGTTGTAATCGG 1139305 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||||| | | |||| ||||||||||||||||| || || ||||| |||||||| | | Sbjct 1139304 CGAGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATTAAACGTTGCTGATCCGGTG 1139245 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || || |||| |||| ||| | |||||| |||||| Sbjct 1139244 GGATTCCTTCCTTGTCTTGGATCTTGGCTTTC-ACATTGTCGATTGTGTCGGATGATTCA 1139186 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGG 33755 || || | || || || || || |||| ||||| || ||||||||||| |||| Sbjct 1139185 ACCTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTTGG 1139130 >seq236 Length=1640546 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | || | ||| || || || || || |||||||| |||| Sbjct 1089263 CACCACCACGGAGACGGAGGACGAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGG 1089204 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||| ||||| |||| || | ||||| ||||| |||||||| |||||||| || | | Sbjct 1089203 CGAGAGTGCGGCCGTCTTCGAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTG 1089144 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || ||| ||||| ||| ||| | |||||| || || Sbjct 1089143 GGATTCCTTCCTTGTCTTGGATCTTCGCTTTCA-CATTGTCGATGGTGTCTGAGGACTCG 1089085 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || || || |||| ||||| || ||||||||||| Sbjct 1089084 ACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 1089035 >seq1177 Length=2734319 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| || || | ||||| || || || ||||| || ||||||||||||| Sbjct 987954 ACCACCTCTTAACCGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGC 987895 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || || | ||||| ||||| || ||||| | ||||| || | || Sbjct 987894 CAAGGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGG 987835 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || || | ||||| ||| | ||||||| || | Sbjct 987834 AATGCCTTCCTTGTCCTGGATCTT-TGCCTTAACATTGTCGATGGTGTCGGAGCTCTCGA 987776 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || ||||| |||| ||||| || || || ||||| Sbjct 987775 CCTCAAGAGTGATGGTCTTACCAGTTAGTGTTTTCACGAAAATTTGCAT 987727 >seq1208 Length=4595443 Score = 89.7 bits (98), Expect = 3e-13 Identities = 162/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| | ||| | ||||||||| || ||| ||||||||| |||||||| || | Sbjct 3925806 ACCACCTCCGAGACGAAGCACCAAATGGAGTGTGGACTCTTTTTGGATGTTGTAGTCAGC 3925747 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||| | | || || | || || || |||| || | |||||| || | || Sbjct 3925746 AAGTGTGTGACCATCCTCTAGCTGCTTACCACCAAAGATAAGCTTCTGCTGGTCCGGAGG 3925687 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTC---GCTTGATT 33697 | ||||| ||||| ||| || ||| ||| | |||| || || |||| | Sbjct 3925686 GATTCCTTCCTTGTCTTGAATCTTAGCTTT-AACGTTGTCAATAGTATCAGAGCTT---T 3925631 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | ||||| ||||| ||||| ||||| || |||||||||||| || Sbjct 3925630 CAACCTCCAAAGTGATGGTTTTGCCTGTCAACGTCTTCACAAAGATCTGCTTA 3925578 Score = 86.0 bits (94), Expect = 4e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| | ||| | ||||||||| || || ||| ||||| ||||||||||| | Sbjct 3926034 ACCACCTCCGAGACGAAGCACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGC 3925975 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||||| | || || | || || |||| ||| || | | |||||| ||| | || Sbjct 3925974 GAGTGTGCGTCCATCTTCGAGCTGCTTACCGGAAAAGATGAGTCTCTGCTGGTCTGGTGG 3925915 Query 33642 CACACCTTCTTTGTCGGCAATTTTC 33666 | || || ||||| |||| ||| Sbjct 3925914 GATCCCCTCCTTGTCCTCAATCTTC 3925890 >seq1125 Length=2998257 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || |||||||| |||| | || ||| |||| || | || |||||||| ||| Sbjct 292785 TCCTTCTGGATGTTGTAGTCGGCTAAGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAA 292844 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| |||||||| || | || | ||||| ||||| || || || | ||| Sbjct 292845 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CATT 292903 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | |||||| || || || || | ||||| || || || |||| ||||| || Sbjct 292904 GTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCAC 292963 Query 33738 AAAGATCTGCAT 33749 ||||||||||| Sbjct 292964 GAAGATCTGCAT 292975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328696212180480