Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1639 178 2e-38 >seq1639 Length=5101707 Score = 178 bits (196), Expect = 2e-38 Identities = 382/564 (68%), Gaps = 14/564 (2%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| ||||| ||| ||||| |||||| | |||| |||| || || || Sbjct 2280327 TGTTCCCAATCCACTACCCAGAGATCTGGGAGATGTACAAGAAAG-CCGAAGCATCGTTC 2280269 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCG---CTGAGC 1455869 |||||||| || || || || || |||| | | |||| | || | | Sbjct 2280268 TGGACCGCTGAAGAAGTAGATCTATCACAAGACAATCGCGATTGGGAGAACAATCTCAAC 2280209 Query 1455870 GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCAT 1455929 |||| || || || |||||||| ||||||||||| ||| |||||||| || || || Sbjct 2280208 GACGGTGAACGTCACTTCATCAAACACGTCCTCGC-TTTCTTCGCCGCATCTGACGGAAT 2280150 Query 1455930 CGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTT 1455989 |||| ||||| || || || || ||| || || ||| | | ||||| ||| Sbjct 2280149 CGTGTTAGAGAATCTCGCTTCTCGATTCATGTCCGATGTTCAAGTCTCGGAGGCGCGTGC 2280090 Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGAT 1456049 || || || ||||||||||| || |||||||| ||||| || | || ||||| | Sbjct 2280089 TTTCTATGGTTTCCAGATCGCGATTGAAAACATTCACTCCGAGATGTATAGTCTCCTTCT 2280030 Query 1456050 CGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGT 1456109 ||| || || |||| || |||| || || || |||||||| || || ||| | Sbjct 2280029 CGATACGTATATCAAAGATAACAAAGAGAGAGATCATCTATTTCGCGCGATTGAAACGAT 2279970 Query 1456110 GCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGA 1456169 || | || ||| || || | ||||||||||| |||||| || || ||| | Sbjct 2279969 TCCTTGCGTCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATCGAC-----GGATCTCAA 2279915 Query 1456170 CACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGT 1456228 ||| || || || | || | || || | || || |||||||| ||||| || || Sbjct 2279914 ACCTTCGCTGAACGAATTGTAGCTTTCGCTTGTGTTGAAGGCATCTTCTTCTCTGGAAGC 2279855 Query 1456229 TTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGC-A 1456287 || ||| ||||||| ||||| ||||| || || |||||||| || | |||| | | Sbjct 2279854 TTTTGCTCCATCTTCTGGCTTAAGAAACGAGGTCTCATGCCTGG--GTTAACTTTCTCAA 2279797 Query 1456288 ACGAATTTATCAGTCGCGACGAAG 1456311 ||||||| ||| || ||||||| Sbjct 2279796 ACGAATTGATCTCACGAGACGAAG 2279773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177623697626928