Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1396 127 2e-24 seq1125 120 3e-22 seq1177 118 1e-21 seq793 105 6e-18 seq1328 96.9 3e-15 seq1208 93.3 4e-14 seq236 93.3 4e-14 seq204 87.8 2e-12 >seq1396 Length=1446835 Score = 127 bits (140), Expect = 2e-24 Identities = 169/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||| | |||||| || | || |||||| || ||||| || || ||| Sbjct 400831 CCACCACGAAGCCTTAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCAGCC 400772 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || ||||| || || || || || | ||||||||||||| |||| Sbjct 400771 AAAGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 400712 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | | ||||||||| |||||| ||||| |||| | | ||||| |||| || Sbjct 400711 ATACCTTCCTTGTCCTGGATCTTAGCCTTCA-CGTTGTCAATGGTGTCAGAGCTC---TC 400656 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||||| ||||| ||||| || |||||||| || || || |||||||| Sbjct 400655 CACCTCCAAGGTGATAGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 400605 Score = 122 bits (134), Expect = 8e-23 Identities = 168/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| ||||| || | || ||| || || ||||||||||| ||| Sbjct 400603 CCACCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCTTTCTGGATGTTGTAATCCGCC 400544 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || |||| |||||| || ||||| ||||||| ||||||||||| ||| Sbjct 400543 AAGGTACGACCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGG 400484 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | | ||||| ||| ||||| ||||| |||| | | ||||| |||| || Sbjct 400483 ATTCCTTCCTTATCCTGAATCTTGGCCTTCA-CGTTGTCGATGGTGTCTGAGCTC---TC 400428 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||||| ||||| || || || || | ||| || || || |||||||| Sbjct 400427 CACCTCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 400377 Score = 118 bits (130), Expect = 1e-21 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | | ||| ||||| || | ||| |||||| ||||||||||| || ||| Sbjct 400375 CCTCCACGCAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCC 400316 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || |||| |||| || || || || || ||||| ||||| | ||||||||||| ||| Sbjct 400315 AAAGTTCTGCCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGTGGA 400256 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTC---GCTCGATTC 35685 | | |||||||||| ||| ||| || || | | | | | ||||| |||| || Sbjct 400255 ATACCCTCCTTGTCC-TGAATTTTAGCTTTGACATTGTCGATGGTGTCGGAGCTC---TC 400200 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||||| ||||| || || || ||||| || || || || || ||||| Sbjct 400199 CACCTCCAAAGTGATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 400149 Score = 102 bits (112), Expect = 7e-17 Identities = 142/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || |||| || || |||| || ||||| || || || || Sbjct 401023 TCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGACCGTCCTCGAGCTGTTTTCCAGCGAAG 400964 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||||||||| | ||| | | ||||||||| |||||| ||||| ||| Sbjct 400963 ATGAGACGCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGATCTTAGCCTTCA-CGTT 400905 Query 35666 G-CCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | | ||||| |||| |||||||||| ||||| || || || || ||||| || Sbjct 400904 GTCAATGGTGTCGGAGCTC---TCCACCTCCAGTGTGATGGTCTTCCCGGTTAAAGTCTT 400848 Query 35722 CACAAATATCTGCAT 35736 ||| || |||||||| Sbjct 400847 CACGAAAATCTGCAT 400833 >seq1125 Length=2998257 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| ||||| |||||||| |||| || |||||||| || || || Sbjct 292785 TCCTTCTGGATGTTGTAGTCGGCTAAGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAA 292844 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| ||||||||||||| || | | ||||||||| |||||| ||| | | | Sbjct 292845 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 292904 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || || ||||| | ||||| || || ||||| | |||||||| Sbjct 292905 TCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACG 292964 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 292965 AAGATCTGCAT 292975 >seq1177 Length=2734319 Score = 118 bits (130), Expect = 1e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | ||||| | ||||| || | || || || || ||||||||||||||| Sbjct 987953 CCACCTCTTAACCGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGCC 987894 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || || ||||| ||||| || || ||||| | |||||||||| |||| Sbjct 987893 AAGGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 987834 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | || ||||||||| ||||||| ||| | | | | | ||||| |||| || Sbjct 987833 ATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCGGAGCTC---TCG 987777 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | ||||| || ||||| || | |||||||| || || ||||| Sbjct 987776 ACCTCAAGAGTGATGGTCTTACCAGTTAGTGTTTTCACGAAAATTTGCAT 987727 >seq793 Length=772624 Score = 105 bits (116), Expect = 6e-18 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | ||||| | ||||| || | || || || |||||||||||||||||| Sbjct 610933 CCACCTCTTAACCGGAGAACCAAGTGGAGGGTCGATTCTTTCTGAATGTTGTAATCGGCC 610874 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || || ||||| ||||| || || || || | |||||||||| |||| Sbjct 610873 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCGGAGGA 610814 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | || || || ||| ||||||| ||| | | | | | ||||| |||| || Sbjct 610813 ATGCCTTCTTTATCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTC---TCA 610757 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | ||||| || || || || | |||||||| || || ||||| Sbjct 610756 ACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 610707 Score = 102 bits (112), Expect = 7e-17 Identities = 142/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||| |||||||| || || | |||| |||| || ||||||||||| ||||| Sbjct 611125 TCCTTTTGGATGTTGTAGTCAGCAAGAGTTCTTCCGTCTTCAAGCTGCTTACCGGCAAAG 611066 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || |||||||||| ||| | | ||||||||| |||| ||||||| ||| Sbjct 611065 ATGAGCCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATC-TTTGCTTTGACGTT 611007 Query 35666 G-CCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | | || || |||| || ||||||| || || || || || |||| ||| || Sbjct 611006 GTCAATAGTATCAGAGCTC---TCAACCTCCAAAGTAATGGTCTTGCCAGTCAGAGTCTT 610950 Query 35722 CACAAATATCTGCAT 35736 ||||| |||||||| Sbjct 610949 GACAAAGATCTGCAT 610935 >seq1328 Length=1576597 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 35519 AACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGC 35578 ||||| | ||||| || | || |||||||||||| |||| ||| ||||| || || Sbjct 273098 AACCTAAGAACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTTATCAGCCAAAGTACGG 273039 Query 35579 TCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCC 35638 | || || ||||| ||||| ||||| || | | ||||||||||| ||| | | ||| Sbjct 273038 CCATCTTCAAGCTGTTTACCGGCAAAAATAAGTCTCTGCTGGTCCGGAGGGATTCCTTCC 272979 Query 35639 TTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTG 35698 || || ||||||| ||| | | | | | |||||| ||| ||||| | || Sbjct 272978 TTATCTTGGATCTTTGCCTTAACATTGTCAATTGTGTCGGAGCTTTCAACCTCAAGAGTT 272919 Query 35699 ATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || || ||||| | ||| || ||||| || ||||| Sbjct 272918 ATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCAT 272881 >seq1208 Length=4595443 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/212 (71%), Gaps = 8/212 (4%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||||||| | || ||| ||||| |||||||| || || | || | | || || Sbjct 3925788 CACCAAATGGAGTGTGGACTCTTTTTGGATGTTGTAGTCAGCAAGTGTGTGACCATCCTC 3925729 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||||| |||| || | | ||||||||||| ||| | | ||||||| | | Sbjct 3925728 TAGCTGCTTACCACCAAAGATAAGCTTCTGCTGGTCCGGAGGGATTCCTTCCTTGT-CTT 3925670 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCG 35702 || || |||| | |||| | | || || ||| ||| ||||||| ||||| | Sbjct 3925669 GAATCTTAGCTTTAACGTTGTCAATAGTATCAGAGCT---TTCAACCTCCAAAGTGATGG 3925613 Query 35703 TTTTACCCGTCAAAGTTTTCACAAATATCTGC 35734 |||| || ||||| || |||||||| |||||| Sbjct 3925612 TTTTGCCTGTCAACGTCTTCACAAAGATCTGC 3925581 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 35507 TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCG 35566 || ||||| | ||||| | ||||| || | ||| ||||| || ||||||||||| Sbjct 3925580 TTACCACCTCCTAACCGGAGAACCAAGTGGAGCGTTGATTCCTTCTGGATGTTGTAATCT 3925521 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 |||||||| || || |||||||| ||||| || || || || | ||||||||| | Sbjct 3925520 GCCAAGGTACGACAATCTTCCAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCTGA 3925461 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGAT 35683 |||| | ||||||||| |||||| ||| | | | | | || || |||| Sbjct 3925460 GGAATGTCTTCCTTGTCCTGAATCTTTGCCTTAACATTGTCGATAGTATCAGAGCTC--- 3925404 Query 35684 TCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||| | || || || || || || | |||||||| || || ||||| Sbjct 3925403 TCTATCTCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 3925351 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||||||| | ||| ||||||||| ||||||||||| || | || || | || || Sbjct 3926016 CACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGCGAGTGTGCGTCCATCTTC 3925957 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||||| | ||| || | | ||||||||| | || | | |||||||||| Sbjct 3925956 GAGCTGCTTACCGGAAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTC 3925897 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGT 35703 ||||| ||| | | | | | ||||| || | || ||||||| || || || Sbjct 3925896 AATCTTCGCCTTGACATTATCGATTGTGTCTGAGCCC---TCAACCTCCAAAGTAATGGT 3925840 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || || || |||||||| || ||||| Sbjct 3925839 CTTTCCAGTACGGGTCTTCACAAAAATTTGCAT 3925807 >seq236 Length=1640546 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| ||||| | || || |||| || ||||| || || || || Sbjct 1089225 TCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCGAGCTGTTTCCCGGCGAAA 1089166 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| ||||||||||||| || | | |||||||| |||||| |||| | | Sbjct 1089165 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTG 1089106 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || || ||||| | || || || || ||||| | |||||||| Sbjct 1089105 TCGATGGTGTCTGAGGACTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACG 1089046 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 1089045 AAGATCTGCAT 1089035 >seq204 Length=2333866 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||||||| | || || || || |||||||||||||| | |||| |||| || Sbjct 1139345 CACCAAATGAAGAGTTGATTCTTTCTGGATGTTGTAATCGGCGAGTGTTCTTCCGTCTTC 1139286 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || || || || || || || || || ||||| |||| || | | |||||||| Sbjct 1139285 CAATTGTTTTCCGGCGAAGATTAAACGTTGCTGATCCGGTGGGATTCCTTCCTTGTCTTG 1139226 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| |||| | | | | |||||| ||||| ||||| | || || || || Sbjct 1139225 GATCTTGGCTTTCACATTGTCGATTGTGTCGGATGATTCAACCTCTAGGGTTATTGTCTT 1139166 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 ||||| | |||||||| || ||||||||| Sbjct 1139165 CCCCGTTAGGGTTTTCACGAAGATCTGCATT 1139135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450782645715520