Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq236 140 3e-28 seq1396 134 1e-26 seq1125 131 2e-25 seq1177 116 4e-21 seq793 107 2e-18 seq1208 105 7e-18 seq1328 102 8e-17 >seq236 Length=1640546 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||||| || ||||| |||||||| || |||||||||||| | Sbjct 1089261 CCACCACGGAGACGGAGGACGAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGGCG 1089202 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| ||||||||||| || || |||||||| |||||||| || || || Sbjct 1089201 AGAGTGCGGCCGTCTTCGAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGG 1089142 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || || ||| || ||| | ||||| || || || || Sbjct 1089141 ATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATGGTGTCTGAGGACTCGACC 1089082 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| || || |||| ||||| ||||| || ||||| || Sbjct 1089081 TCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 1089032 >seq1396 Length=1446835 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| | || ||||| || | ||| || || || ||||| |||||||||||||| ||| Sbjct 400375 CCTCCACGCAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCC 400316 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | || ||| || || ||||| || ||||| ||||| | |||||| || || || Sbjct 400315 AAAGTTCTGCC-GTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGTGG 400257 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || || || || |||||||| |||||| ||| | |||||||| ||||| Sbjct 400256 AATACCCTCCTTGTCCTGAATTTTAGCTTTGACATTGTCGATGGTGTCGGAGCTCTCCAC 400197 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||| ||||| || || || || || || |||||||||||||| Sbjct 400196 CTCCAAAGTGATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 400149 Score = 127 bits (140), Expect = 2e-24 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || | ||| || | || | ||| || || |||||||| || ||||||||||| ||| Sbjct 401059 CCACCACGGAGACGGAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCC 401000 Query 134546 AACGGTGTGAGA--GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | ||||| || ||| ||||||||||| || || || || | ||||||||| || || Sbjct 400999 A---GTGTGCGACCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGA 400943 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || ||||| || || || || || || || ||| | |||||||| ||| Sbjct 400942 GGGATACCTTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCC 400883 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||| || ||||||||||| || |||||||| ||||| Sbjct 400882 ACCTCCAGTGTGATGGTCTTCCCGGTTAAAGTCTTCACGAAAATCTGCAT 400833 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 || || ||||||||||| ||||| ||||| || |||||| || | || || ||||| Sbjct 399895 TGGAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAAC-GTACGGCCATCCTCTAGCTG 399837 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || || || || | | ||||||||| || || ||||| || || ||||| || || Sbjct 399836 CTTTCCAGCGAAGATAAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTGGATCTT 399777 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| || ||| | |||||| || |||||| ||||| || || || || ||||| Sbjct 399776 GGCTTTAACGTTGTCGATTGTGTCAGAGCTTTCCACCTCGAGGGTGATAGTCTTTCCGGT 399717 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | ||| |||||||| || ||||| Sbjct 399716 GAGAGTCTTAACGAAGATCTGCAT 399693 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || || || || ||||| || ||||||||||| | | ||| ||| ||| Sbjct 400129 ACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTTCTGCCGTCCTCG 400070 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || || || || || || ||||| | |||||||| || || || || || || || || Sbjct 400069 AGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCCGGTGGGATACCCTCCTTGTCCTGG 400010 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||| || ||| | |||||| || |||||| ||||| || || || || Sbjct 400009 ATCTTAGCTTTAACGTTGTCGATTGTGTCAGAGCTTTCCACCTCGAGGGTGATAGTCTTC 399950 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||| ||||| |||||||||||||| Sbjct 399949 CCAGTTAGGGTTTTGACGAAAATTTGCAT 399921 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 134504 CACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGT 134562 ||| | ||| || || || ||||| || ||||| ||||| ||||| | || || || | Sbjct 400814 CACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCAGCCAAAG-TGCGACCATCCT 400756 Query 134563 CGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTT 134622 | ||||||||||| || || || | ||||||||| || || || || ||||| || || | Sbjct 400755 CAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCCT 400696 Query 134623 GAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTT 134682 | || || || || ||| | ||||| || ||||| || | || || |||| Sbjct 400695 GGATCTTAGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCCACCTCCAAGGTGATAGTTT 400636 Query 134683 TACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| || ||||| || ||||| Sbjct 400635 TGCCAGTCAAAGTCTTGACGAAGATCTGCAT 400605 >seq1125 Length=2998257 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| ||||| |||||||| || |||||||||||| | Sbjct 292749 CCACCACGGAGACGAAGGACAAGGTGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGGCT 292808 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| |||||||| || || || |||||||| |||||||| || || || Sbjct 292809 AAGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGG 292868 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || || ||||| ||| | ||||| || || || || Sbjct 292869 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCGACC 292928 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 ||||| || || || || || |||| ||||| ||||| || ||||| || Sbjct 292929 TCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 292978 >seq1177 Length=2734319 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| | || | || | ||| || || ||||| || || |||||||| ||| | Sbjct 987953 CCACCTCTTAACCGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGCC 987894 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || |||||||| || || || ||||| | ||||| || || || Sbjct 987893 AAGGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 987834 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || ||| || || ||| | |||||||| || || Sbjct 987833 ATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCGGAGCTCTCGACC 987774 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| ||||| |||| ||||| |||||||||||||| Sbjct 987773 TCAAGAGTGATGGTCTTACCAGTTAGTGTTTTCACGAAAATTTGCAT 987727 >seq793 Length=772624 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| | || | || | ||| || || ||||| || ||||||||||| ||| | Sbjct 610933 CCACCTCTTAACCGGAGAACCAAGTGGAGGGTCGATTCTTTCTGAATGTTGTAATCGGCC 610874 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || |||||||| || || || || || | ||||| || || || Sbjct 610873 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCGGAGGA 610814 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || || || ||| || || ||| | ||||| || || || Sbjct 610813 ATGCCTTCTTTATCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACC 610754 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| || || || | ||||| |||||||||||||| Sbjct 610753 TCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 610707 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || ||||||||||| ||||||||||| ||| || ||| || Sbjct 611143 ACAAGGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCAGCAAGAGTTCTTCCGTCTTCA 611084 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || ||||| || | | ||||| || || || || ||||| || || || Sbjct 611083 AGCTGCTTACCGGCAAAGATGAGCCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGG 611024 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || ||| |||||| ||| | || || || || || || | ||||||||| || Sbjct 611023 ATCTTTGCTTTGACGTTGTCAATAGTATCAGAGCTCTCAACCTCCAAAGTAATGGTCTTG 610964 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | ||| || || || || ||||| Sbjct 610963 CCAGTCAGAGTCTTGACAAAGATCTGCAT 610935 >seq1208 Length=4595443 Score = 105 bits (116), Expect = 7e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCT 134568 ||| ||||| |||||||| || |||||||| || ||||| ||| || | || || |||| Sbjct 3925554 GTGGAGCGTTGATTCCTTCTGGATGTTGTAATCTGCCAA-GGTACGACAATCTTCCAGCT 3925496 Query 134569 GTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTT 134628 |||| || || || || || | ||||| || | || ||| |||| || || ||||| | Sbjct 3925495 GTTTACCGGCGAAGATTAATCTTTGCTGGTCCTGAGGAATGTCTTCCTTGTCCTGAATCT 3925436 Query 134629 TTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGG 134688 || || || ||| | || || || || | |||||||||||||| || || | Sbjct 3925435 TTGCCTTAACATTGTCGATAGTATCAGAGCTCTCTATCTCGAGAGTAATGGTCTTGCCAG 3925376 Query 134689 TTAAAGTTTTAACGAAAATTTGCAT 134713 | | ||||| |||||||||||||| Sbjct 3925375 TGAGTGTTTTCACGAAAATTTGCAT 3925351 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| ||| || | ||| | || || ||||| || ||||| ||||||||||| || Sbjct 3925805 CCACCTCCGAGACGAAGCACCAAATGGAGTGTGGACTCTTTTTGGATGTTGTAGTCAGCA 3925746 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||||| || || ||||| || || |||| || | |||||| || || || Sbjct 3925745 AGTGTGTGACCATCCTCTAGCTGCTTACCACCAAAGATAAGCTTCTGCTGGTCCGGAGGG 3925686 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || |||||||| || ||| || ||| | || || || ||| || Sbjct 3925685 ATTCCTTCCTTGTCTTGAATCTTAGCTTTAACGTTGTCAATAGTATCAGAGCTTTCAACC 3925626 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGC 134711 || | ||| |||||||| || || || || || || || || ||| Sbjct 3925625 TCCAAAGTGATGGTTTTGCCTGTCAACGTCTTCACAAAGATCTGC 3925581 >seq1328 Length=1576597 Score = 102 bits (112), Expect = 8e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCT 134568 ||| || || || ||||||||||| |||| || ||||| || | || || |||| Sbjct 273084 GTGGAGGGTTGACTCCTTTTGAATATTGTTATCAGCCAA-AGTACGGCCATCTTCAAGCT 273026 Query 134569 GTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTT 134628 |||| || |||||||| | | |||||| || || || || ||||| || ||||| || | Sbjct 273025 GTTTACCGGCAAAAATAAGTCTCTGCTGGTCCGGAGGGATTCCTTCCTTATCTTGGATCT 272966 Query 134629 TTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGG 134688 || || || ||| | ||||||||| ||| || || ||||| ||||| || || | Sbjct 272965 TTGCCTTAACATTGTCAATTGTGTCGGAGCTTTCAACCTCAAGAGTTATGGTCTTGCCCG 272906 Query 134689 TTAAAGTTTTAACGAAAATTTGCAT 134713 | | ||| || || || |||||||| Sbjct 272905 TAAGAGTCTTTACAAAGATTTGCAT 272881 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/204 (70%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || ||||| || || | ||||||||| ||| ||| || || || || ||| Sbjct 273540 TGCAGAGTTGATTCTTTCTGGACGTTGTAGTCAGCAAGAGTGCGACCATCCTCAAGATGT 273481 Query 134571 TTGCCTGCAAAAATCAAA-CGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || || || | ||| || || | | || ||||||||||||||||| || Sbjct 273480 TTGCCAGCGAAGATAAAGTCTCTGTTGGTCTAGTTGGATTCCTTCTTTTTCTTGAATCTT 273421 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| ||| | |||| || || || || |||||||||||||| || || Sbjct 273420 CGCCTTGACATTGTCAATGGTGTGAGAGCTCTCAACTTCTAGAGTAATGGTTTTTCCAGT 273361 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | |||| || || |||||||| Sbjct 273360 GAGGGTTTCCACAAACATTTGCAT 273337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505386118818880