Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq178 120 3e-22 seq3 104 3e-17 >seq178 Length=2153606 Score = 120 bits (132), Expect = 3e-22 Identities = 134/178 (75%), Gaps = 1/178 (1%) Strand=Plus/Plus Query 158029 TTACCGTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGC 158088 || |||| | |||||||| || ||||| ||| |||||||| |||| || || || || Sbjct 356578 TTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAACTCCTGTTGCAGCTGC 356637 Query 158089 GAGT-GCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTC 158147 || | || || ||| | ||||||| | || || || ||| || |||| |||||||| Sbjct 356638 GACTTGCTGTTTTCTTGATCTATCCAATTGGGCAGGGAAGTTTTTCTGATGGTATGCCTC 356697 Query 158148 TTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCT 158205 | || |||||||||||||| |||| ||| ||||| |||| || || |||||||| || Sbjct 356698 TAGGAATCTCTGGTACTTTCAACTTTATGATTGTACTCCAGGCTGAGCACAACATTCT 356755 >seq3 Length=3374423 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 158808 GACGGCGATCAAGTTATTCAGTGTGAGTCCGATCAGTACATTCTAGACGCTGCAGAAGAG 158867 || || || |||| ||| ||||||| ||| ||| |||| || || || || || Sbjct 1010068 GAAGGTGAGCAAGAGATTGAGTGTGACGACGACGTTTACGTTCTTGATGCGGCTGAGGAA 1010009 Query 158868 GCAGGAGTTGATATTAACTATTCCTGTCGTGCTGGTGCCTGTTCTTCCTGTGCTGGTAAA 158927 || ||| | ||| | || || || ||||||||| | ||||| ||||||||||||| Sbjct 1010008 GCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAA 1009949 Query 158928 CTTGTCAGCGGAACTGTTGACCAAAGCGATCAGTCATTCTTGGATGATGATCAGATTGCA 158987 ||| ||| |||||||||| || ||| ||| | |||||||| |||||| Sbjct 1009948 GTTGCGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTTGATGATGACCAGATTAAT 1009889 Query 158988 GAAGGATTTATCCTTACGTGTGTATCTTATCCCACTTCTGAT 159029 |||| ||| | || || ||||| ||||||| ||||||||| Sbjct 1009888 CAAGGGTTTGTTCTCACTTGTGTGGCTTATCCTACTTCTGAT 1009847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573010075516800