Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq178 109 6e-19 seq3 105 7e-18 >seq178 Length=2153606 Score = 109 bits (120), Expect = 6e-19 Identities = 130/175 (74%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 160316 CCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATC 160375 |||| | |||||||| || ||||| ||| |||||||| |||| || || || || | Sbjct 356581 CCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAACTCCTGTTGCAGCTGCGAC 356640 Query 160376 T-GCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTG 160434 | ||||| ||| | | ||||| | || || || ||| || |||| ||||||||| | Sbjct 356641 TTGCTGTTTTCTTGATCTATCCAATTGGGCAGGGAAGTTTTTCTGATGGTATGCCTCTAG 356700 Query 160435 GTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCT 160489 | |||||||||||||| |||| ||| ||||| |||| || || ||||| || || Sbjct 356701 GAATCTCTGGTACTTTCAACTTTATGATTGTACTCCAGGCTGAGCACAACATTCT 356755 >seq3 Length=3374423 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 161090 GAAGGTAACCAAGTTGTTCAATGTGAACCAGACCAGTACATTTTAGATGCAGCAGAAGAG 161149 |||||| | |||| || | ||||| ||| ||| || | ||||| || || || Sbjct 1010068 GAAGGTGAGCAAGAGATTGAGTGTGACGACGACGTTTACGTTCTTGATGCGGCTGAGGAA 1010009 Query 161150 GCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGTGCTTGCTCTTCCTGTGCAGGTAAA 161209 || ||| | ||| | || ||||| ||||||||| |||| || |||||| |||||| Sbjct 1010008 GCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAA 1009949 Query 161210 ATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCCTTCTTGGATGATGACCAGATTGAA 161269 || || || | || ||||||||||||||| ||| | ||||||||||||||| || Sbjct 1009948 GTTGCGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTTGATGATGACCAGATT-AA 1009890 Query 161270 TC-TGGATTCCTTTTGACATGTGTTGCATATCCTACT 161305 || || || || | || ||||| || ||||||||| Sbjct 1009889 TCAAGGGTTTGTTCTCACTTGTGTGGCTTATCCTACT 1009853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559490404052800