Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq178 114 2e-20 seq3 91.5 2e-13 >seq178 Length=2153606 Score = 114 bits (126), Expect = 2e-20 Identities = 127/168 (76%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 181344 GGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCT-GCTGT 181402 |||||||| || ||||| ||||||||| || |||| || ||||| || || ||||| Sbjct 356588 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAACTCCTGTTGCAGCTGCGACTTGCTGT 356647 Query 181403 ATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTC 181462 ||| | ||||||| | || || || ||| ||||| | ||||| || || ||||| Sbjct 356648 TTTCTTGATCTATCCAATTGGGCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTC 356707 Query 181463 TGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCT 181510 |||||| ||||||| ||| |||| |||| || |||||||||||||| Sbjct 356708 TGGTACTTTCAACTTTATGATTGTACTCCAGGCTGAGCACAACATTCT 356755 >seq3 Length=3374423 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 179485 CTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTTGT 179544 ||||| || ||||| ||||| || | ||| | ||||||||| ||||||||| ||||| Sbjct 1010026 CTTGATGCGGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCTTGT 1009967 Query 179545 TCATCTTGTGCTGGTAAATTAGAGAGTGGATCTGTTGATCAAAGCGATCAATCGTTTTTG 179604 || |||||||||||| | | | |||||||||||| || || || || | Sbjct 1009966 TCGAGCTGTGCTGGTAAAGTTGCGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTT 1009907 Query 179605 GATGACGATCAAATGGAGTCGGGATTTATTCTGACTTGCGTATCTTATCCTACTAGTGAT 179664 ||||| || || || | || ||| |||| ||||| || ||||||||||| |||| Sbjct 1009906 GATGATGACCAGATTAATCAAGGGTTTGTTCTCACTTGTGTGGCTTATCCTACTTCTGAT 1009847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614602664792320