Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq1639 86.0 9e-12 >seq1639 Length=5101707 Score = 86.0 bits (94), Expect = 9e-12 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 174459 TGGGATCAGTTTTGTTCCTGGGTCAC-ATCAACCAACAATCGTCTTTACGTCGGTTGGTT 174517 |||||||| || ||| |||| | | |||| || | |||||||||| | || ||| | Sbjct 3906355 TGGGATCACTTCTGTAACTGGATACCGATCACTGAATA-TCGTCTTTACATTGGATGGCT 3906413 Query 174518 CGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTATGTTTC-ATTATCGCTTTCG 174576 |||||| | || || ||||| || | |||||||| | |||| |||||||| ||| Sbjct 3906414 TGGTGTTTTGATAATCCCTACCTTATACACCGCAACT-TCCATTTCTATTATCGCATTCA 3906472 Query 174577 TGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGT 174636 | | |||||| | ||| || || || || || |||||||| | |||| || || | | Sbjct 3906473 TTGTTGCTCCTCTAGTAGATATTGATGGTATTCGTGAACCTTTTTCTGGATCTCTTCTTT 3906532 Query 174637 ATGGAAACAACAT 174649 | |||||||| || Sbjct 3906533 ACGGAAACAATAT 3906545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729911862710720