Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq3 122 1e-22 seq178 105 8e-18 >seq3 Length=3374423 Score = 122 bits (134), Expect = 1e-22 Identities = 137/181 (76%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 176352 CTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTTGT 176411 ||||| || ||||| ||||| || | ||| | ||||||||| ||||||||| ||||| Sbjct 1010026 CTTGATGCGGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCTTGT 1009967 Query 176412 TCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGTGATCAGTCTTTCCTG 176471 || |||||||| ||| | | | ||| |||||||| ||| ||| ||| |||||| Sbjct 1009966 TCGAGCTGTGCTGGTAAAGTTGCGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTT 1009907 Query 176472 GATGATGATCAAATTGAATCT-GGTTTTATTCTGACTTGCGTATCTTATCCTACTAGTGA 176530 |||||||| || ||| |||| || ||| |||| ||||| || ||||||||||| ||| Sbjct 1009906 GATGATGACCAGATT-AATCAAGGGTTTGTTCTCACTTGTGTGGCTTATCCTACTTCTGA 1009848 Query 176531 T 176531 | Sbjct 1009847 T 1009847 >seq178 Length=2153606 Score = 105 bits (116), Expect = 8e-18 Identities = 129/175 (74%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 178205 CCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATC 178264 |||| | |||||||| || ||||| ||| ||||| || |||| || ||||| || | Sbjct 356581 CCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAACTCCTGTTGCAGCTGCGAC 356640 Query 178265 G-GCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTG 178323 || || ||| || ||||||| | || || || |||||||| | ||||| || | Sbjct 356641 TTGCTGTTTTCTTGATCTATCCAATTGGGCAGGGAAGTTTTTCTGATGGTATGCCTCTAG 356700 Query 178324 GCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCT 178378 | ||||||||||| ||||||| ||| |||| |||| || || ||||||||||| Sbjct 356701 GAATCTCTGGTACTTTCAACTTTATGATTGTACTCCAGGCTGAGCACAACATTCT 356755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605994873966720