Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq178 111 2e-19 seq3 89.7 6e-13 >seq178 Length=2153606 Score = 111 bits (122), Expect = 2e-19 Identities = 126/168 (75%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 158742 GGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCT-GCTGT 158800 |||||||| || ||||| ||| |||||||| | || || || || || || ||||| Sbjct 356588 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAACTCCTGTTGCAGCTGCGACTTGCTGT 356647 Query 158801 ATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTC 158860 ||| | ||||||| | || || || ||| || |||| ||||||||| || ||||| Sbjct 356648 TTTCTTGATCTATCCAATTGGGCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTC 356707 Query 158861 TGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCT 158908 ||||||||| |||| ||| ||||| |||| || || |||||||| || Sbjct 356708 TGGTACTTTCAACTTTATGATTGTACTCCAGGCTGAGCACAACATTCT 356755 >seq3 Length=3374423 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 159546 TACATTTTAGACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTATTCATGTCGTGCTGGT 159605 ||| || | || || ||||||||||| || | ||| || || || || ||||||||| Sbjct 1010032 TACGTTCTTGATGCGGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGT 1009973 Query 159606 GCTTGTAGCACATGTGCTGGTAAGATTGAGAGCGGGACAGTTGACCAAAGTGACCAATCT 159665 ||||| | ||||||||||| ||| | || | |||||||| |||||| | Sbjct 1009972 TCTTGTTCGAGCTGTGCTGGTAAAGTTGCGTCTGGATCTGTTGACCAGTCTGACCAGAGT 1009913 Query 159666 TTCTTGGACGATGATCAACTCGCTGAAGGATTTCTTCTCACTTGTGTCTCCTACCCTACA 159725 ||| | || ||||| || | | |||| ||| ||||||||||||| | || ||||| Sbjct 1009912 TTCCTTGATGATGACCAGATTAATCAAGGGTTTGTTCTCACTTGTGTGGCTTATCCTACT 1009853 Query 159726 TCAGACGTAACTAT 159739 || || || || || Sbjct 1009852 TCTGATGTTACCAT 1009839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552460174891520