Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1639 221 2e-52 seq1604 122 1e-22 >seq1639 Length=5101707 Score = 221 bits (244), Expect = 2e-52 Identities = 590/891 (66%), Gaps = 17/891 (2%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 |||||||| |||||||| |||||||||||||| || ||||| || | | || || | Sbjct 2279460 TTTTGGTAATCACCAACACGTTTCTCGAAAAAGTTGGTTTTCCCCTGAAGAGAGATTAGT 2279519 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||| ||||||| |||||||| ||| || || | || | | | Sbjct 2279520 TCCATCCAATCAAAGGGATTAGTCGCACCGTACACCTTACCGTACCCAAGAGCACCCAAA 2279579 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 | ||||| |||||||| || || || |||||| |||| ||||| || | | Sbjct 2279580 AGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATACCAACCAAC 2279639 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 || || || || | ||||||| | || || || || || || | || Sbjct 2279640 GCGCACGGAAGCGCGTCGCACACAAACTCTCTCTCAATCTCGACCGCATCACAAACGATT 2279699 Query 39566 GATGTTACTACCT-CATCACTCGG--TGGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622 || | | ||| | | |||||| | | | | | | ||| || | |||||| ||| Sbjct 2279700 GACTTGA-TACGTTCTTCACTCAGCTTTGTTTTGAGGAGTGTGTAGAG--TAAGCAAGCG 2279756 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 || || || |||| ||| || |||| || |||||||| || || || | |||||| Sbjct 2279757 AAATCGCAGTGTAAGCCTTCGTCTCGTGAGATCAATTCGTTTGAGAAAGTTAACCCAGGC 2279816 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCC 39741 || ||||| || || || ||||| || |||| |||||||| | ||||| ||||||||||| Sbjct 2279817 ATGAGACCTCGTTTCTTAAGCCAGAAGATGG-AGCAAAAGCTTCCAGAGAAGAAGATGCC 2279875 Query 39742 TTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCACTT 39801 ||| || || || || |||| || || || | || | | ||||| || Sbjct 2279876 TTCAACACAAGCGAAAGCTACAATTCGTTCAGCGAAGGTTTGAGATCCGTCGATCCATTT 2279935 Query 39802 CTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861 | ||||| | |||||||||| || ||||| || ||||| || || ||| |||| Sbjct 2279936 CATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATCGCGCGAAATAGATG 2279995 Query 39862 ATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATG 39921 || | | || | ||||||| | ||| ||||| | | ||||||||||| || || || Sbjct 2279996 ATCTCTCTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACATCTCGGAGTG 2280055 Query 39922 GATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC 39981 |||||||||||||| ||||| || || || ||| | || || | | ||| || || Sbjct 2280056 AATGTTTTCAATCGCGATCTGGAAACCATAGAAAGCACGCGCCTCCGAGACTTGAACATC 2280115 Query 39982 TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGC 40041 || |||| || | ||| || ||| ||||| ||| ||||| || || || Sbjct 2280116 GGACATGAATCGAGAAGCGAGATTCTCTAACACGATTCCGTCAGATGCGGCGAAGAAAGC 2280175 Query 40042 CAATACATGTTTAATAAAATATTTTTCATCG--GGTGTCAAT-TTATTCCAGTC---ATT 40095 | || ||||| || || | |||| || | || | | || | ||| || ||| Sbjct 2280176 GAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTCTCCCAATCGCGATT 2280235 Query 40096 GATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTA 40155 | |||| ||||| ||||||||||||||| ||||| ||||| || || || || ||||| Sbjct 2280236 G---TCTTGTGATAGATCTACTTCTTCAGCGGTCCAGAACGATGCTTCGGCTTTCTTGTA 2280292 Query 40156 CATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGG 40206 ||| | ||| || || | || || ||||| || ||| ||||| | ||| Sbjct 2280293 CATCTCCCAGATCTCTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGG 2280343 >seq1604 Length=1253100 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | || | ||||| | || | || | |||||| |||| |||||| Sbjct 402929 TCCTCCTTGGTCAACATAACGAGCAGTATCGTTGAATACACGCAGCATTGGAACAATACC 402988 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||| ||| ||| |||||||| |||| ||||||||| | || Sbjct 402989 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAGCTGA 403048 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || || ||| || | |||||| ||| | ||| |||||||| Sbjct 403049 AACACCAATACCACCAGCAGATTTGCTAATAACAGCACACTCTTTGAGTGTTTCATATAT 403108 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| |||||||||||| ||||| | ||||| ||||| Sbjct 403109 GCCCTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 403150 Score = 102 bits (112), Expect = 1e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| || || || | ||||||||||| |||||||||||| | | ||| | || || | Sbjct 403270 GTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATGG 403329 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||| || || || || ||||| || ||||| || | || || | ||||| | Sbjct 403330 TAAGTTTGTATTGCGGAATCAATATCATCCTTGTGAATGCCAACAGCTACCCTCATCAGC 403389 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || || ||||| | ||| || ||| | | ||| || ||||||||| | || ||| Sbjct 403390 ATGTGTTGAGGCCTTTCAACAACTTTCCCTTGGACTTTTAAGAGGTATGATCTCTCAAGA 403449 Query 70171 GTTTTAAACCCAAA 70184 |||||||| ||||| Sbjct 403450 GTTTTAAATCCAAA 403463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686892108116160