Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1639 158 1e-33 seq1810 95.1 1e-14 >seq1639 Length=5101707 Score = 158 bits (174), Expect = 1e-33 Identities = 260/370 (70%), Gaps = 4/370 (1%) Strand=Plus/Minus Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 || |||||| | | || || || ||| ||||| || || || || || ||||| ||| Sbjct 2280115 GATGTTCAAGTCTCGGAGGCGCGTGCTTTCTATGGTTTCCAGATCGCGATTGAAAACATT 2280056 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 || || || ||||| ||||| || | |||||||| ||||||||| | |||| || Sbjct 2280055 CACTCCGAGATGTATAGTCTCCTTCTCGATACGTATATCAAAGATAACAAAGAGAGAGAT 2279996 Query 44036 CGATTGTTTAATGCGATAGAAACAGTACCT-GCGATTAAACATAAAGCAGACTGGGCCCT 44094 | | ||| ||||| ||||| | ||| ||| | | ||||| | ||||| | Sbjct 2279995 CATCTATTTCGCGCGATTGAAACGATTCCTTGCGTCGCGA-AGAAAGCTCAGTGGGCGAT 2279937 Query 44095 TAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154 |||||||| | | | | | || | |||||| |||| || || || ||| || Sbjct 2279936 GAAATGGATCGACGGATCTCAAACCTTCGCTGAACGAATTGTAGCTTTCGCTTGTGTTGA 2279877 Query 44155 AGGCATTTTCTTTTCAGGAT-CGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGA 44213 |||||| ||||| || ||| | ||||| |||| || ||| | |||||||||||| | | Sbjct 2279876 AGGCATCTTCTTCTCTGGAAGCTTTTGCT-CCATCTTCTGGCTTAAGAAACGAGGTCTCA 2279818 Query 44214 TGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATT 44273 |||||||||| || || ||||| || || || || || ||||||||||| ||||||| Sbjct 2279817 TGCCTGGGTTAACTTTCTCAAACGAATTGATCTCACGAGACGAAGGCTTACACTGCGATT 2279758 Query 44274 TTGCTTGCTT 44283 | |||||||| Sbjct 2279757 TCGCTTGCTT 2279748 >seq1810 Length=8348134 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 40993 ATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGG 41052 |||| ||| ||||| || ||| ||| || ||||| || | || | | ||||||| Sbjct 6693968 ATCCTGATGATCGACGAATCATAATGTCGGCTTGGAATCCTCCTGATCTTAAGTTGATGG 6693909 Query 41053 CATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTC 41112 || | || || || || |||| |||||||| ||| ||||| ||||| ||||||| Sbjct 6693908 CACTTCCTCCATGCCACATGTTTGCACAGTTTTATGTTGCAAATGGAGAACTTTCATGTC 6693849 Query 41113 AATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 || ||||||| | |||| || ||||| || || || ||||||||||| || Sbjct 6693848 AAATGTATCAGCGCTCAGCCGATATGGGTCTCGGTGTACCGTTTAACATTGC 6693797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397446583273720