Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1328 113 4e-20 seq236 111 1e-19 seq793 96.9 3e-15 seq1208 86.0 5e-12 seq1125 86.0 5e-12 seq1396 84.2 2e-11 >seq1328 Length=1576597 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27022 CTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCA 27081 |||| | ||||| | ||||| || | || || || ||||||||||||| || || Sbjct 273106 CTCCTCTCAACCTAAGAACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTTATCAGCCA 273047 Query 27082 TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCA 27141 | || | ||||| |||||||||||||| |||| || | ||| || ||||| || | Sbjct 273046 AAGTACGGCCATCTTCAAGCTGTTTACCGGCAAAAATAAGTCTCTGCTGGTCCGGAGGGA 272987 Query 27142 CACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTT 27201 || || ||||| |||||| || | | || | ||||| | | |||||| | Sbjct 272986 TTCCTTCCTTATCTTGGATCTTTGCCTTAACATTGTCAATTGTGTCGGAGCTTTCAACCT 272927 Query 27202 CTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | |||||||| | |||||||| ||||| || ||||||||||||||| Sbjct 272926 CAAGAGTTATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCATA 272880 >seq236 Length=1640546 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||| | ||| || || || || || ||||||||| | |||| ||||||||||||| Sbjct 1089238 ATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCGAGCTG 1089179 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 ||| |||||| |||| | ||||| || ||||| || | || || || || |||||| Sbjct 1089178 TTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTT 1089119 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 ||||| | || | ||||||| || || || ||||| ||||| | || ||||| Sbjct 1089118 CGCTTTCACATTGTCGATGGTGTCTGAGGACTCGACCTCTAGGGTTATGGTCTTCCCCGT 1089059 Query 27224 CAGAGTTTTCACAAAGATTTGCAT 27247 || |||||||| ||||| ||||| Sbjct 1089058 TAGGGTTTTCACGAAGATCTGCAT 1089035 >seq793 Length=772624 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGC 27089 ||||| | ||||| || | || || ||||| ||||| ||||| ||| || | | || Sbjct 610924 AACCGGAGAACCAAGTGGAGGGTCGATTCTTTCTGAATGTTGTAATCGGCCAAGGTACGG 610865 Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149 | ||||| ||||||||||||||| | || | | || || ||||| || | || ||| Sbjct 610864 CCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCGGAGGAATGCCTTCT 610805 Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209 ||||| |||||| || | | || | ||||| | | ||||| || ||||| Sbjct 610804 TTATCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTG 610745 Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||||| || || |||||||| || |||||||| Sbjct 610744 ATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 610707 >seq1208 Length=4595443 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 |||||||| | ||||| || ||||| || ||||| || || ||| ||| | ||||| Sbjct 3926015 ACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGCGAGTGT-GCGTCCATCTTC 3925957 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||| ||||||| | ||||| | ||| || || || || | ||||| || || | Sbjct 3925956 GAGCTGCTTACCGGAAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTC 3925897 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||| || | | || | ||||||| | | ||||| || | ||| || | || Sbjct 3925896 AATCTTCGCCTTGACATTATCGATTGTGTCTGAGCCCTCAACCTCCAAAGTAATGGTCTT 3925837 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || | || |||||||| ||||||||| Sbjct 3925836 TCCAGTACGGGTCTTCACAAAAATTTGCATA 3925806 >seq1125 Length=2998257 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTAC 27108 ||| || || || || || ||||||||| || | ||| || ||||||||||||| || | Sbjct 292778 CGTTGATTCCTTCTGGATGTTGTAGTCGGCTAAGGTT-CGTCCGTCTTCGAGCTGCTTTC 292836 Query 27109 CGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTT 27168 ||||| |||| | ||||| || ||||| || | || || || || ||||||| | Sbjct 292837 CGGCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCT 292896 Query 27169 TCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAG 27228 | | | || | ||||| | | || || || || || || | || ||||| || | Sbjct 292897 TGACATTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGG 292956 Query 27229 TTTTCACAAAGATTTGCAT 27247 ||||||| ||||| ||||| Sbjct 292957 TTTTCACGAAGATCTGCAT 292975 >seq1396 Length=1446835 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || || ||||||||||| || || | || | || || Sbjct 399901 ACCAAATGGAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAACGTACGGCCATCCTCT 399842 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || ||| | || || | ||| |||||||| || | ||||| || || | Sbjct 399841 AGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTGG 399782 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| ||| | | | || | ||||| | | ||| || || || || |||| || Sbjct 399781 ATCTTGGCTTTAACGTTGTCGATTGTGTCAGAGCTTTCCACCTCGAGGGTGATAGTCTTT 399722 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| || || ||||| ||||| Sbjct 399721 CCGGTGAGAGTCTTAACGAAGATCTGCAT 399693 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || || ||||| || |||| | || || Sbjct 400813 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCAGCCAAAGTGCGACCATCCTCA 400754 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| || ||| | ||||||||||| || ||||| || | ||| || || || | Sbjct 400753 AGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGG 400694 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| |||| | | || | ||||| | | || || || | || |||| |||| Sbjct 400693 ATCTTAGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCCACCTCCAAGGTGATAGTTTTG 400634 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||| ||| || || ||||| ||||| Sbjct 400633 CCAGTCAAAGTCTTGACGAAGATCTGCAT 400605 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || |||||||| || |||| |||| ||| Sbjct 401041 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGACCGTCCTCG 400982 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| || ||| | ||||||||||| || || || || | ||| || || || | Sbjct 400981 AGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGG 400922 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| |||| | | || | ||||| | | || || || || || || | || Sbjct 400921 ATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTTC 400862 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || | ||| ||||| || || |||||| Sbjct 400861 CCGGTTAAAGTCTTCACGAAAATCTGCATA 400832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424924332241728