Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1028 149 8e-31 seq1188 122 1e-22 seq1071 122 1e-22 seq1470 107 2e-18 seq1639 96.9 4e-15 >seq1028 Length=1373109 Score = 149 bits (164), Expect = 8e-31 Identities = 282/414 (68%), Gaps = 6/414 (1%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 |||||| ||||| | | ||| || || |||| || | || ||||| | | ||||| Sbjct 777705 ATCAAGAATATCTGCTCTATTGGTTGCAGCAACTACGATAACACCAGTGTTACCTTCAAA 777764 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 ||||||||||| || || | ||||| | || |||||||| ||||| || || Sbjct 777765 ACCATCCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTTTCATCGTTACCTCC--- 777821 Query 11602 ACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 |||| |||| | | |||| | || || ||||| || ||||||| |||||||| || Sbjct 777822 ACCAATTCCAGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCAACAAAGACAATGCA 777881 Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 || || || ||| | | || |||||||| || ||| |||||| ||||| || Sbjct 777882 AGGAGCGTTCTCCTTGGCTTTCTTGAAAAGATCGCGGACTCTTGAGGCACCAACACCGAC 777941 Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGC 11778 ||||||||| ||||| | | | ||| || ||| || ||| | |||||| || Sbjct 777942 AAACATCTCAACAAACTCAGAACCTGAGATGGAGAAGAAAGGCACACCAGCTTCACCAGC 778001 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCG 11838 |||||| || | ||||| || || ||||| || ||| || || | ||| Sbjct 778002 AATGGCTTTTGCTAAAAGGGTTTTCCCGGTACCAGGAGGACCAATAAGGAGAACACCTTT 778061 Query 11839 GGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 ||||||||||||||| || | |||||||||||| ||| ||||| ||||| Sbjct 778062 CGGGATCTTGGCACCAACCGCAGTAAATCTCTCGGGTTTCTTCAGAAACTCCAC 778115 >seq1188 Length=2619186 Score = 122 bits (134), Expect = 1e-22 Identities = 198/281 (70%), Gaps = 8/281 (3%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || |||||||| || |||||||||||||||||| || Sbjct 851198 AAATCCATCCATCTCTGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCCT-- 851141 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| ||||| | | ||| | ||||| || ||||||||||||||||| |||||| Sbjct 851140 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAATACAATA 851081 Query 11657 CATGGTTGATTTTCG--CGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 || || | ||||| || | || || | ||| | ||| || ||||| |||| Sbjct 851080 CAAGG--GGCTTTCGACTTAGCCTTCTCGAACAAATCCCTAACTCTAGATGCACCGACAC 851023 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCAC 11774 | || || | ||||||||| | | ||| | ||| || ||| || || | ||| | Sbjct 851022 CGACGAAAAGCTCCACAAACTCCGAGGCCGCGCAAGAGAAGAAGGGTACTCCAGCTTCCC 850963 Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGC 11815 | || | || | || | ||| ||||| |||||||| ||| Sbjct 850962 CAGCCACCGCCCTAGCCAAGAGTGTCTTACCCGTACCAGGC 850922 >seq1071 Length=2817113 Score = 122 bits (134), Expect = 1e-22 Identities = 267/397 (67%), Gaps = 10/397 (3%) Strand=Plus/Minus Query 11501 TTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGT 11560 || || || |||| || | || ||||| | | ||||| ||||||||||| || || Sbjct 1432700 TTGGTTGCAGCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGG 1432641 Query 11561 AATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGT 11617 | ||||||| || |||||||| |||||||| || |||| || | | | | Sbjct 1432640 AGCTGATTAAGGGTCTGTTCTCTTTCATCATTACCTCC---ACCAATTCCGGTTCCTCTT 1432584 Query 11618 TGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCG 11677 ||| | || || ||||| || ||||| | || ||||| || || |||||| || Sbjct 1432583 TGCCTACCAACAGCATCTATTTCATCCACAAAAACAATGCACGGAGCATTTTCTTTTGCT 1432524 Query 11678 ATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTT 11737 ||| || |||||||| |||||| ||||| ||||| ||||||||||| ||||| | Sbjct 1432523 TTTTTGAAAAGATCGCGGACCCTTGATGCACCAACACCGACAAACATCTCAACAAACTCA 1432464 Query 11738 GCGGCAGAGCACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGA 11795 | | ||| ||| | ||| || ||| | |||||| || |||||| || | | Sbjct 1432463 GAACCCGAG--ATGGAAAAGAAGGGTACACCAGCTTCACCAGCAATGGCTTTTGCCAACA 1432406 Query 11796 GGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCAC 11855 |||| || || ||||| || ||| | || || | ||| ||||||| ||||||| Sbjct 1432405 GGGTTTTCCCAGTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCAA 1432346 Query 11856 TTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 || | ||||| || | ||| ||||| ||||| Sbjct 1432345 CCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 1432309 >seq1470 Length=2917085 Score = 107 bits (118), Expect = 2e-18 Identities = 194/279 (70%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGC-TG 11597 ||| ||||||||||| || | | |||||||| || |||||||||||||||||| | Sbjct 2793284 AAATCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCCACC 2793343 Query 11598 GCATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 || | | ||||| | | ||| | ||||| |||||||||||||| || || ||||||| Sbjct 2793344 GCCCATC-CCAGCTCCTCTCTGCCTACCCACGGCATCAATCTCATCGATAAACACAATAC 2793402 Query 11658 ATGGTTGATTTTCG--CGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 | ||| ||||| || | ||||| | ||| | ||| || ||||||||||| Sbjct 2793403 AAGGT--GCTTTCGATTTCGCCTTCTCAAACAAATCCCTAACTCTAGACGCACCCACACC 2793460 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 |||||| | ||| ||||| | | |||| || | ||| || || | ||| || Sbjct 2793461 AACAAAAAGCTCAACAAACTCAGACGCAGCACATGAAAAGAACGGCACTCCAGCTTCTCC 2793520 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || | |||| || | || ||||| |||||||| || Sbjct 2793521 AGCTACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGG 2793559 >seq1639 Length=5101707 Score = 96.9 bits (106), Expect = 4e-15 Identities = 135/189 (71%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 || || ||||| || || | ||| |||||||| || || ||||||||||| || ||| Sbjct 2279772 CCTTCGTCTCGTGAGATCAATTCGTTTGAGAAAGTTAACCCAGGCATGAGACCTCGTTTC 2279831 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | ||| | || | ||| || || ||||||||||| || || ||||| || || Sbjct 2279832 TTAAGCCAGAAGATGGAGCAAAAGCTTCCAGAGAAGAAGATGCCTTCAACACAAGCGAAA 2279891 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856 || | || ||||| ||||||| |||| | | || | ||||||||| ||||| | Sbjct 2279892 GCTACAATTCGTTCAGCGAAGGTTTGAGA---TCCGTCGATCCATTTCATCGCCCACTGA 2279948 Query 122857 GCCTTCTTC 122865 || |||||| Sbjct 2279949 GCTTTCTTC 2279957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628016738822400