Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1639 100 4e-16 seq1470 96.9 4e-15 seq1188 86.0 8e-12 >seq1639 Length=5101707 Score = 100 bits (110), Expect = 4e-16 Identities = 182/262 (69%), Gaps = 7/262 (3%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 || ||||| || ||||| | ||| || ||||| | || ||||||||||| || ||| Sbjct 2279772 CCTTCGTCTCGTGAGATCAATTCGTTTGAGAAAGTTAACCCAGGCATGAGACCTCGTTTC 2279831 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| || | ||||| |||||||||||||| || || ||||| ||||| Sbjct 2279832 TTAAGCCAGAAGATGGAGCAAAAGCTTCCAGAGAAGAAGATGCCTTCAACACAAGCGAAA 2279891 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGC 130213 || | | || ||||| |||| | || | || | ||| |||||||||||||| Sbjct 2279892 GCTACAATTCGTTCAGCGAAGGTTTGAGA---TCCGTCGATCCATTTCATCGCCCACTGA 2279948 Query 130214 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT-TTTCTG 130271 || || ||| ||| || || | || | ||||| ||| || | | ||| | | || Sbjct 2279949 GCTTTCTTCGCGACGCAAGGAATCGTTTCAATCGCGCGAAATAGATGATCTCTCTCTTTG 2280008 Query 130272 ATGGATCTTTGATGTACTTATC 130293 | ||||||||| ||| |||| Sbjct 2280009 TT--ATCTTTGATATACGTATC 2280028 >seq1470 Length=2917085 Score = 96.9 bits (106), Expect = 4e-15 Identities = 192/279 (69%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA-G 14210 ||| ||||||||||||||||| || ||||| || || ||||| | |||||||| || Sbjct 2793284 AAATCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCCACC 2793343 Query 14211 GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270 || | | || || | | ||| |||| ||||| ||||| |||||||| || || |||| Sbjct 2793344 GCCCATC-CCAGCTCCTCTCTGCCTACCCACGGCATCAATCTCATCGATAAACACAATAC 2793402 Query 14271 ATGGTTGATTTTCA-CGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329 | || || ||| | || ||||| | ||| | ||||| ||||| ||||| Sbjct 2793403 AAGG-TGCTTTCGATTTCGCCTTCTCAAACAAATCCCTAACTCTAGACGCACCCACACCA 2793461 Query 14330 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCC 14389 ||||| | ||| ||||| | | || | |||| | ||| || || || ||| || Sbjct 2793462 ACAAAAAGCTCAACAAACTCAGACGCAGCACATGAAAAGAACGGCACTCCAGCTTCTCCA 2793521 Query 14390 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 || | |||| || | || ||||||||||| || ||| Sbjct 2793522 GCTACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGGT 2793560 >seq1188 Length=2619186 Score = 86.0 bits (94), Expect = 8e-12 Identities = 189/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||| ||||| | ||||| ||||| ||||| | |||||||| | Sbjct 851198 AAATCCATCCATCTCTGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCC--T 851141 Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | ||| || || | | ||| | || || |||||||| ||||| ||||| || ||| Sbjct 851140 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAATACAATA 851081 Query 14270 CATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || | ||| || || || || | ||| | ||||| ||||||||||| Sbjct 851080 CAAGG-GGCTTTCGACTTAGCCTTCTCGAACAAATCCCTAACTCTAGATGCACCGACACC 851022 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388 || || | ||||||||| | | ||| | || || |||||| || || ||| || Sbjct 851021 GACGAAAAGCTCCACAAACTCCGAGGCCGCGCAAGAGAAGAAGGGTACTCCAGCTTCCCC 850962 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || | || | || | ||| ||||| ||||| || || Sbjct 850961 AGCCACCGCCCTAGCCAAGAGTGTCTTACCCGTACCAGG 850923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618420172024640