Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1028 120 4e-22 seq1470 111 2e-19 seq1639 109 6e-19 seq1071 107 2e-18 seq1188 98.7 1e-15 >seq1028 Length=1373109 Score = 120 bits (132), Expect = 4e-22 Identities = 286/424 (67%), Gaps = 14/424 (3%) Strand=Plus/Plus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 |||||| ||||| | | ||| || || || | || | || ||| || | | ||||| Sbjct 777705 ATCAAGAATATCTGCTCTATTGGTTGCAGCAACTACGATAACACCAGTGTTACCTTCAAA 777764 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 |||||||||||| || | || || || | || ||||| | |||||| || || Sbjct 777765 ACCATCCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTTTCATCGTTACCT---CC 777821 Query 9676 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 |||| |||| | | |||| | || || ||||| || ||||||| ||||| ||||| Sbjct 777822 ACCAATTCCAGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCAACAAAGACAATGCA 777881 Query 9733 TGGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 9791 || || || || ||| ||| ||||| || || | ||| || ||||| | Sbjct 777882 AGGAGCGTTCTCCTTGGCTTTCTTGAAA-AGATCGCGGACTCTTGAGGCACCAACACCGA 777940 Query 9792 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9850 |||||||||| ||||| | | | | | || | || ||| || ||| || |||||| Sbjct 777941 CAAACATCTCAACAAACTCAGAACCTG-AGATGGAGAAGAAAGGCACACCAGCTTCACCA 777999 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 9910 ||||||||| || | ||| || || || ||||| || ||| ||||| ||||| Sbjct 778000 GCAATGGCTTTTGCTAAAAGGGTTTTCCCGGTACCAGGAGGACCAATAAGGAGAACACCT 778059 Query 9911 CGTGGAATCTTGGCGCCACTTCCAAAGT--ATCTCTCAGGTTGCTTAAGAAAATCCACAA 9968 || |||||||| ||| || ||| ||||||| |||| ||| ||||| ||||| | Sbjct 778060 TTCGGGATCTTGGCACCA--ACCGCAGTAAATCTCTCGGGTTTCTTCAGAAACTCCACCA 778117 Query 9969 TTTC 9972 ||| Sbjct 778118 CTTC 778121 >seq1470 Length=2917085 Score = 111 bits (122), Expect = 2e-19 Identities = 198/281 (70%), Gaps = 10/281 (4%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCA-TTCGCTG 9671 ||| ||||||||||| |||||||| || ||||| || ||||| | |||||| ||| Sbjct 2793284 AAATCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCCACC 2793343 Query 9672 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 || | | ||||| | | ||| | |||||||||||||||||||| || || || || | Sbjct 2793344 GCCCATC-CCAGCTCCTCTCTGCCTACCCACGGCATCAATCTCATCGATAAACACAATAC 2793402 Query 9732 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACA 9787 | ||| ||||| || || ||||| | ||||| || || || | || |||||| Sbjct 2793403 AAGGT--GCTTTCGATTTCGCCTTCTCAAACAAATCCC-TA-ACTCTAGACGCACCCACA 2793458 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9847 |||||||| | ||| ||||| | | || | |||| | ||| || || || ||| Sbjct 2793459 CCAACAAAAAGCTCAACAAACTCAGACGCAGCACATGAAAAGAACGGCACTCCAGCTTCT 2793518 Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || || | |||| || | ||| ||||| |||||||| || Sbjct 2793519 CCAGCTACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGG 2793559 >seq1639 Length=5101707 Score = 109 bits (120), Expect = 6e-19 Identities = 387/598 (65%), Gaps = 10/598 (2%) Strand=Plus/Minus Query 94345 GAACCTCTCCTAGCCCCCACACTAAACAGATTTACTGTGTTCCCCCTGAAGTATCCACAC 94404 || || || ||| | || || | | ||||||| | ||||||| | | || ||| | Sbjct 2280364 GAGCCACTTCTAACACCAACCCCAGACAGATTCTGTATGTTCCCAATCCACTACCCAGAG 2280305 Query 94405 CTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAAT-TGGACTGCTGAAGAGGTAGATCT 94463 ||||||| | || ||||| || | || | | ||||| |||||||| |||||||| Sbjct 2280304 ATCTGGGAGATGTACAAGAAAGC-CGAAGCATCGTTCTGGACCGCTGAAGAAGTAGATCT 2280246 Query 94464 CTCAAAGGATTTGGACGATTGGAAGAC---TCTAAATGAAAATGAAAAGAAATTCATAAA 94520 ||| | || ||||||| ||| ||| || || |||| | ||||| || Sbjct 2280245 ATCACAAGACAATCGCGATTGGGAGAACAATCTCAACGACGGTGAACGTCACTTCATCAA 2280186 Query 94521 ATACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGTTTTTGAGAATATCAATAACAA 94580 | || |||| || ||||| || | ||| || ||||| || || |||||| || | | Sbjct 2280185 ACACGTCCTCGCTTTCTTCGCCGCATCTGACGGAATCGTGTTAGAGAATCTCGCTT-CTC 2280127 Query 94581 CTTTGCTGAT-GAGGTGCAATCCTCTGAAGCGAGATCCTTCTATGCGTATCAGTGTCATA 94639 || || || || ||| ||| || ||| | | ||||||| | ||| | Sbjct 2280126 GATTCATGTCCGATGTTCAAGTCTCGGAGGCGCGTGCTTTCTATGGTTTCCAGATCGCGA 2280067 Query 94640 ATGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTG 94699 ||||| | || |||| || ||| || | || | |||||| || ||| Sbjct 2280066 TTGAAAACATTCACTCCGAGATGTATAGTCTCCTTCTCGATACGTATATCAAAGATAACA 2280007 Query 94700 CTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGG 94759 |||| | || || ||| || || |||| |||| || | |||||||| Sbjct 2280006 AAGAGAGAGATCATCTATTTCGCGCGATTGAAACGATTCCTTGCGTCGCGAAGAAAGCTC 2279947 Query 94760 ATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCAT 94819 | ||||| ||||| ||| | || | || | |||| ||||| ||| | | || | Sbjct 2279946 AGTGGGCGATGAAATGGATCGACGGA---TCTCAAACCTTCGCTGAACGAATTGTAGCTT 2279890 Query 94820 TTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGA 94879 | || |||||||| || |||||||||||||| ||| ||| | || | ||||| |||| Sbjct 2279889 TCGCTTGTGTTGAAGGCATCTTCTTCTCTGGAAGCTTTTGCTCCATCTTCTGGCTTAAGA 2279830 Query 94880 AGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 | |||||||||||||| || | ||||| ||||| | ||||| || ||||| || Sbjct 2279829 AACGAGGTCTCATGCCTGGGTTAACTTTCTCAAACGAATTGATCTCACGAGACGAAGG 2279772 >seq1071 Length=2817113 Score = 107 bits (118), Expect = 2e-18 Identities = 248/368 (67%), Gaps = 12/368 (3%) Strand=Plus/Minus Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670 ||||||||||||||||| |||| || || |||| || ||||| | ||||||||| || Sbjct 1432664 TCAAAACCATCCATCTCAGTCAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCATTACCT 1432605 Query 9671 GGCATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 9727 |||| || | | | |||| | || || ||||| || ||||| | || || Sbjct 1432604 ---CCACCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCCACAAAAACA 1432548 Query 9728 ATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCA 9785 ||||| || |||||| || || || ||||| || || |||| || || | Sbjct 1432547 ATGCACGGAGCATTTTCTTTTGCTTTTTTGAAAAGATCGCG--GACCCTTGATGCACCAA 1432490 Query 9786 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGAT 9844 |||| ||||||||||| ||||| | | | | | || | | |||||| ||| || | Sbjct 1432489 CACCGACAAACATCTCAACAAACTCAGAACCCG-AGATGGAAAAGAAGGGTACACCAGCT 1432431 Query 9845 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGG 9904 ||||| ||||||||| || | || || || || ||||| || ||| | ||||| Sbjct 1432430 TCACCAGCAATGGCTTTTGCCAACAGGGTTTTCCCAGTACCAGGAGGACCAACAAGGAGA 1432371 Query 9905 GCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCC 9964 ||||| || ||| ||| ||| || | | |||||||| | ||| ||||| ||| Sbjct 1432370 ACACCTTTGGGGATCCGGGCACCAACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCC 1432311 Query 9965 ACAATTTC 9972 || | ||| Sbjct 1432310 ACCACTTC 1432303 >seq1188 Length=2619186 Score = 98.7 bits (108), Expect = 1e-15 Identities = 196/283 (69%), Gaps = 12/283 (4%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||||||||| | || ||||| || ||||| | |||||||| || Sbjct 851198 AAATCCATCCATCTCTGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCCT-- 851141 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | ||| ||||| | | ||| | ||||| || ||||||||||||||||| || || Sbjct 851140 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAATACAATA 851081 Query 9731 CATGGTTGATTTTCG--CGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786 || || | ||||| ||| || || | ||||| || || || | || || || Sbjct 851080 CAAGG--GGCTTTCGACTTAGCCTTCTCGAACAAATCCC-TA-ACTCTAGATGCACCGAC 851025 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 ||| || || | ||||||||| | | ||| | || || |||||| || || ||| Sbjct 851024 ACCGACGAAAAGCTCCACAAACTCCGAGGCCGCGCAAGAGAAGAAGGGTACTCCAGCTTC 850965 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9889 || || | || | || | || |||||||||||||| ||| Sbjct 850964 CCCAGCCACCGCCCTAGCCAAGAGTGTCTTACCCGTACCAGGC 850922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583246626762560