Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1639 95.1 1e-14 seq1810 87.8 2e-12 seq1429 86.0 7e-12 seq1366 86.0 7e-12 seq971 86.0 7e-12 >seq1639 Length=5101707 Score = 95.1 bits (104), Expect = 1e-14 Identities = 308/468 (66%), Gaps = 19/468 (4%) Strand=Plus/Plus Query 74767 AGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCT 74826 ||||||| |||| |||||||| || || || | | |||||||| || || || | Sbjct 2279770 AGCCTTCGTCTCGTGAGATCAATTCGTTTGAGAAAGTTAACCCAGGCATGAGACCTCGTT 2279829 Query 74827 TCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAA 74886 |||| | ||| ||||||| || ||| ||| ||||||||||||||| ||||| || | Sbjct 2279830 TCTTAAGCCAGAAGATGGAGCAAAAGCTTCCAGAGAAGAAGATGCCTTCAACACAAGCGA 2279889 Query 74887 AGGCGACAAGGCGTTGCGCGAACGGT--GCATCGGAAGTCATCCAAGTCTGAGCCCATTC 74944 | || |||| |||| ||||| | | ||| | | ||||| || ||||| | Sbjct 2279890 AAGCTACAATTCGTTCAGCGAAGGTTTGAGATCCGTCG--ATCCATTTCATCGCCCACTG 2279947 Query 74945 AGCTT--TTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCT 75002 ||||| |||| ||| ||| | || || ||||| | || || | ||||| Sbjct 2279948 AGCTTTCTTCG--CGACGCAAGGAATCGTTTCAATCGCGCGAAATAGATGATCTCTCTCT 2280005 Query 75003 TCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCG 75062 | | ||| |||| | | || | | || ||| |||| || ||||| || Sbjct 2280006 TTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACATCTCGGAGTGAATGTTTTCA 2280065 Query 75063 TTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAA- 75120 | ||| |||| | | ||||||| |||||||| | | || ||||| || | Sbjct 2280066 AT-CGCGATCTGGAAACCATAGAAAGCACGCGCCTCCGAGACTTGAACATC---GGACAT 2280121 Query 75121 -AATTCA-TGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTAC 75178 ||| | ||| |||||| | ||||| ||||| || |||||||| ||||| || || Sbjct 2280122 GAATCGAGAAGCGAGATTCTCTAACACGATTCCGTCAGATGCGGCGAAGAAAGCGAGGAC 2280181 Query 75179 CATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTG---TCCCAATC 75223 |||||| ||||| || ||| |||| |||| ||| |||||||| Sbjct 2280182 GTGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTCTCCCAATC 2280229 >seq1810 Length=8348134 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 5325438 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 5325497 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 5325498 TGAGCTATGAAAGCA 5325512 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 6886675 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 6886616 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 6886615 TGAGCTACGAGAGC 6886602 >seq1429 Length=3043751 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 656298 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 656239 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 656238 TGAGCTATGAAAGC 656225 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 2943778 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2943837 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 2943838 TGAGCTATGAAAGC 2943851 >seq1366 Length=583463 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 269446 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 269505 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 269506 TGAGCTATGAAAGC 269519 >seq971 Length=4928269 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 3438195 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3438136 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 3438135 TGAGCTATGAAAGC 3438122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547202702651200