Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq204 131 1e-25 seq1396 122 5e-23 seq1208 116 2e-21 seq1328 105 4e-18 seq793 105 4e-18 seq406 102 5e-17 seq1177 93.3 3e-14 >seq204 Length=2333866 Score = 131 bits (144), Expect = 1e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||||||||| | ||||||||| ||||| || || || ||||| ||||| | Sbjct 1139362 CCTCCTCTAAGACGAAGCACCAAATGAAGAGTTGATTCTTTCTGGATGTTGTAATCGGCG 1139303 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| ||||||| | |||||| ||||| || |||||||| || || ||||| || Sbjct 1139302 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATTAAACGTTGCTGATCCGGTGGG 1139243 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| |||| || | ||| || | |||||||| || || Sbjct 1139242 ATTCCTTCCTTGTCTTGGATC-TTGGCTTTCACATTGTCGATTGTGTCGGATGATTCAAC 1139184 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || | |||||| || || || |||| |||||||| || |||||||| || Sbjct 1139183 CTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 1139133 >seq1396 Length=1446835 Score = 122 bits (134), Expect = 5e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| ||||| || || || |||||| |||||||| || || | | |||| Sbjct 400366 AGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTG 400307 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||||||||||||||| || ||||| || || | ||| |||||||| || | |||||| Sbjct 400306 CCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGTGGAATACCCTCC 400247 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | ||| || | || ||||| ||||||||| |||| || Sbjct 400246 TTGTC-CTGAATTTTAGCTTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCCAAAGT 400188 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || ||||| || || ||||| ||||| Sbjct 400187 GATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 400149 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || || ||||| || ||||| || || | ||||| || Sbjct 401050 AGACGGAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGA 400991 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || ||||| || || || || | |||||| ||||| || || | || ||| Sbjct 400990 CCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATACCTTCC 400931 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||||| | || ||| | ||| ||||| ||||||||| |||| || Sbjct 400930 TTGTCCTGGATCTTA-GCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGT 400872 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || |||||||| || ||||| ||||||||||| Sbjct 400871 GATGGTCTTCCCGGTTAAAGTCTTCACGAAAATCTGCAT 400833 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||||||||| ||||| || || || ||| || || ||||| ||||| | Sbjct 400604 GCCACCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCTTTCTGGATGTTGTAATCCGC 400545 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || || | || || | || || |||||||| || || | ||| |||||||| || Sbjct 400544 CAAGGTACGACCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGG 400485 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCA 34657 | ||| ||||| || ||||| | || ||| | || |||||| |||||||| Sbjct 400484 GATTCCTTCCTTATCCTGAATCTTG-GCCTTCACGTTGTCGATGGTGTCTGAGCTCTCCA 400426 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| ||| || || || || || | || || || ||||||||||| Sbjct 400425 CCTCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 400377 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||||||||| ||| ||||| ||||| || ||||| | | || || | || || Sbjct 399901 ACCAAATGGAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAACGTACGGCCATCCTCT 399842 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || || || || || | | ||| || ||||| || | |||||||||||| | Sbjct 399841 AGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTGG 399782 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| || | ||||||| | |||||||| ||| ||||| || | ||| || || || Sbjct 399781 ATC-TTGGCTTTAACGTTGTCGATTGTGTCAGAGCTTTCCACCTCGAGGGTGATAGTCTT 399723 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | || || || || |||||||| Sbjct 399722 TCCGGTGAGAGTCTTAACGAAGATCTGCAT 399693 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || ||||| || || | || |||| |||| || ||||| || ||||| || Sbjct 400112 CTCCTTCTGGATGTTGTAGTCAGCGAGGGTTCTGCCGTCCTCGAGTTGCTTTCCGGCGAA 400053 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || || | || || ||||| || | ||||||||||| |||| || | ||||||| Sbjct 400052 GATCAATCTTTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGATC-TTAGCTTTAACGT 399994 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | |||||||| ||| ||||| || | ||| || || || || |||| ||||| | Sbjct 399993 TGTCGATTGTGTCAGAGCTTTCCACCTCGAGGGTGATAGTCTTCCCAGTTAGGGTTTTGA 399934 Query 34694 CAAAAATCTGCAT 34706 | ||||| ||||| Sbjct 399933 CGAAAATTTGCAT 399921 >seq1208 Length=4595443 Score = 116 bits (128), Expect = 2e-21 Identities = 163/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | |||||||||||| ||| ||| ||||| ||||| || || | | Sbjct 3925805 CCACCTCCGAGACGAAGCACCAAATGGAGTGTGGACTCTTTTTGGATGTTGTAGTCAGCA 3925746 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| | | || || || || ||||| |||| || | ||| |||||||| || Sbjct 3925745 AGTGTGTGACCATCCTCTAGCTGCTTACCACCAAAGATAAGCTTCTGCTGGTCCGGAGGG 3925686 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| ||| || | ||||||| | ||| || || ||| || || Sbjct 3925685 ATTCCTTCCTTGTCT-TGAATCTTAGCTTTAACGTTGTCAATAGTATCAGAGCTTTCAAC 3925627 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGC 34704 |||| || || ||||| || || ||||| |||||||| |||||| Sbjct 3925626 CTCCAAAGTGATGGTTTTGCCTGTCAACGTCTTCACAAAGATCTGC 3925581 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | |||||||||||| || ||||||||| ||||| ||||| | Sbjct 3926033 CCACCTCCGAGACGAAGCACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGCG 3925974 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| || || ||||||| ||| || | | ||| ||||| || || Sbjct 3925973 AGTGTGCGTCCATCTTCGAGCTGCTTACCGGAAAAGATGAGTCTCTGCTGGTCTGGTGGG 3925914 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||| || | || || || ||||||||| || ||| || Sbjct 3925913 ATCCCCTCCTTGTCCTCAATC-TTCGCCTTGACATTATCGATTGTGTCTGAGCCCTCAAC 3925855 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || || || ||||||||||| ||||| Sbjct 3925854 CTCCAAAGTAATGGTCTTTCCAGTACGGGTCTTCACAAAAATTTGCAT 3925807 >seq1328 Length=1576597 Score = 105 bits (116), Expect = 4e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| ||||| || |||||||||||| || | ||| | | || || | |||||| Sbjct 273089 ACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTTATCAGCCAAAGTACGGCCATCTTCA 273030 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || |||||||||||||| || | | ||| |||||||| || | ||| ||||| ||| | Sbjct 273029 AGCTGTTTACCGGCAAAAATAAGTCTCTGCTGGTCCGGAGGGATTCCTTCCTTATCTTGG 272970 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| |||| ||||| | ||||||||| ||| || || || | ||||| || || Sbjct 272969 ATC-TTTGCCTTAACATTGTCAATTGTGTCGGAGCTTTCAACCTCAAGAGTTATGGTCTT 272911 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || ||||| || ||||| Sbjct 272910 GCCCGTAAGAGTCTTTACAAAGATTTGCAT 272881 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || ||||| |||||| || ||||| ||||| | ||| || || | || || ||||| Sbjct 273311 TGAAGAGTTGACTCCTTCTGGATGTTGTAATCCGCAAGCGTACGACCATCCTCGAGTTGC 273252 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||||||||| || | | ||| ||||| || || | ||| || || ||| |||| || Sbjct 273251 TTACCGGCAAAGATAAGTCTCTGCTGGTCTGGAGGGATTCCTTCTTTATCTTGGATC-TT 273193 Query 34624 TGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || ||| || || || ||| ||| || || || | ||||| || || || || Sbjct 273192 GGCCTTGACGTTATCGATGGTATCTGAGCTTTCGACCTCAAGTGTTATAGTCTTCCCTGT 273133 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || || ||||| |||||||| Sbjct 273132 AAGAGTCTTAACAAAGATCTGCAT 273109 >seq793 Length=772624 Score = 105 bits (116), Expect = 4e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 |||||||| ||||| || || | ||| |||| |||||||||| || ||||||||||| Sbjct 611125 TCCTTTTGGATGTTGTAGTCAGCAAGAGTTCTTCCGTCTTCAAGCTGCTTACCGGCAAAG 611066 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | | || |||||||| || | ||| |||||||| |||| |||| ||| ||| | Sbjct 611065 ATGAGCCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATC-TTTGCTTTGACGTT 611007 Query 34636 -AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 ||| || || |||||| || |||| || || || || || || | || || || Sbjct 611006 GTCAATAGTATCAGAGCTCTCAACCTCCAAAGTAATGGTCTTGCCAGTCAGAGTCTTGAC 610947 Query 34695 AAAAATCTGCAT 34706 ||| |||||||| Sbjct 610946 AAAGATCTGCAT 610935 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | || | ||||| ||||| || || || |||||||| ||||| | Sbjct 610933 CCACCTCTTAACCGGAGAACCAAGTGGAGGGTCGATTCTTTCTGAATGTTGTAATCGGCC 610874 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| || ||||||||||| || ||||| | || |||||||| || Sbjct 610873 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCGGAGGA 610814 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || || || || |||| |||| ||||| | || ||||| |||||| || Sbjct 610813 ATGCCTTCTTTATCCTGGATC-TTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAAC 610755 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || || || || | |||||||| ||||| ||||| Sbjct 610754 CTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 610707 >seq406 Length=3140938 Score = 102 bits (112), Expect = 5e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || ||||| | ||| |||||||| ||||| ||| || || ||||| || || | Sbjct 2970412 CCACCCCTAAGCCTCAAGACCAAATGAAGAGTCGACTCTTTCTGGATGTTGTAGTCCGCT 2970471 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 |||||||| | ||||||||||||||||| |||||||| | | |||||| || || || Sbjct 2970472 AGTGTTCGACCATCTTCAAGTTGTTTACCAGCAAATATCAGCCTCTGTTGATCAGGTGGT 2970531 Query 34600 ACTCCCTCCTTGTC 34613 | |||||| ||||| Sbjct 2970532 ATTCCCTCTTTGTC 2970545 >seq1177 Length=2734319 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | || | ||||| ||||| || || || || ||||| ||||| | Sbjct 987953 CCACCTCTTAACCGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGCC 987894 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| || ||||||||||| || || || | || |||||||| || Sbjct 987893 AAGGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 987834 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||| |||| ||||| | || ||||| |||||| || Sbjct 987833 ATGCCTTCCTTGTCCTGGATC-TTTGCCTTAACATTGTCGATGGTGTCGGAGCTCTCGAC 987775 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || ||||| |||| |||||||| ||||| ||||| Sbjct 987774 CTCAAGAGTGATGGTCTTACCAGTTAGTGTTTTCACGAAAATTTGCAT 987727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314722143268952