Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq204 134 1e-26 seq1396 109 5e-19 seq1328 109 5e-19 seq793 109 5e-19 seq1177 100 2e-16 seq1208 95.1 1e-14 >seq204 Length=2333866 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | || || || || || ||| | ||| Sbjct 1139136 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAATCATCC 1139195 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| || || |||||||| ||||| || ||||| ||||| Sbjct 1139196 GACACAATCGACAATGTGAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCGGATCAG 1139255 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | |||||| ||||||||||||||| | || | ||||||||||| Sbjct 1139256 CAACGTTTAATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACACTCGCCGATTACAAC 1139315 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || || || || || | |||||||| Sbjct 1139316 ATCCAGAAAGAATCAACTCTTCATTTGGT 1139344 >seq1396 Length=1446835 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||| || ||| | || ||| | || ||||| ||| Sbjct 400149 ATGCAAATTTTCGTCAAGACGTTGACTGGAAAGACCATCACTTTGGAGGTGGAGAGCTCC 400208 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| |||||||| ||||| || || || ||||| || || Sbjct 400209 GACACCATCGACAATGTCAAAGCTAAAATTCAGGACAAGGAGGGTATTCCACCGGACCAG 400268 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || |||||| | |||||| | || | | || |||||| Sbjct 400269 CAGAGATTGATCTTTGCTGGAAAACAACTTGAAGACGGCAGAACTTTGGCTGACTACAAC 400328 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || | || ||||| |||||| |||| || || || Sbjct 400329 ATTCAGAAGGAGTCTACACTTCACTTGGTCTTGCGTCTGCGTGGAGGTAT 400378 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || || ||| | || || | || ||||| || Sbjct 400377 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACCATCACCTTGGAGGTGGAGAGCTCA 400436 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || ||||| || || ||||| || || || || || Sbjct 400437 GACACCATCGACAACGTGAAGGCCAAGATTCAGGATAAGGAAGGAATCCCTCCGGACCAG 400496 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||| || || ||||| || || ||| | | ||||||||| Sbjct 400497 CAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACCTTGGCGGATTACAAC 400556 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| ||| | || ||||| |||||| | || |||||||| Sbjct 400557 ATCCAGAAAGAGTCAACCCTTCACTTGGTCTTGCGTCTTCGTGGTGGCAT 400606 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||| |||| ||||| |||| || | || ||||| || Sbjct 400604 CATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACTATCACCTTGGAGGTGGAGAGCTC 400663 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || || || || || ||||| ||||| || || || || || Sbjct 400664 TGACACCATTGACAACGTGAAGGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCA 400723 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| |||||||| | || || || || | | || || || Sbjct 400724 GCAGCGTCTCATCTTCGCTGGCAAACAGCTTGAGGATGGTCGCACTTTGGCTGACTATAA 400783 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||| || |||||||||||| | || ||||| Sbjct 400784 CATCCAGAAGGAGTCGACCCTTCACTTGGT 400813 >seq1328 Length=1576597 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || |||||||| ||||| || |||||| | || |||||||| || ||| ||| Sbjct 272881 ATGCAAATCTTTGTAAAGACTCTTACGGGCAAGACCATAACTCTTGAGGTTGAAAGCTCC 272940 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||| || ||||| || ||||| || || || || || Sbjct 272941 GACACAATTGACAATGTTAAGGCAAAGATCCAAGATAAGGAAGGAATCCCTCCGGACCAG 273000 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| ||||| | ||||| | || | | ||| |||| Sbjct 273001 CAGAGACTTATTTTTGCCGGTAAACAGCTTGAAGATGGCCGTACTTTGGCTGATAACAAT 273060 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 |||||||||||||| ||| | || |||||| Sbjct 273061 ATTCAAAAGGAGTCAACCCTCCACTTGGTT 273090 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| || || ||| |||| || ||||| || ||| || Sbjct 273109 ATGCAGATCTTTGTTAAGACTCTTACAGGGAAGACTATAACACTTGAGGTCGAAAGCTCA 273168 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | ||||| || || ||||| |||||||| || || || || || Sbjct 273169 GATACCATCGATAACGTCAAGGCCAAGATCCAAGATAAAGAAGGAATCCCTCCAGACCAG 273228 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| || ||| | || || || || || | ||||||||| Sbjct 273229 CAGAGACTTATCTTTGCCGGTAAGCAACTCGAGGATGGTCGTACGCTTGCGGATTACAAC 273288 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || | | | ||| | || |||||||| Sbjct 273289 ATCCAGAAGGAGTCAACTCTTCACCTTCTCCTTCGTCTTCGTGGTGGCAT 273338 >seq793 Length=772624 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| || || |||||| | || ||||| || || || || Sbjct 610707 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 610766 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||| || || || ||||||||||| || || || || Sbjct 610767 GACACCATCGACAATGTTAAGGCAAAGATCCAGGATAAAGAAGGCATTCCTCCGGACCAG 610826 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||| | |||||| ||||| | ||||| | ||| | ||||||||||| Sbjct 610827 CAAAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACAAC 610886 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || |||||| | || |||||| | || || | ||||| || Sbjct 610887 ATTCAGAAAGAATCGACCCTCCACTTGGTTCTCCGGTTAAGAGGTGGTAT 610936 >seq1177 Length=2734319 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| || || || ||| | || |||||||| || || ||| Sbjct 987727 ATGCAAATTTTCGTGAAAACACTAACTGGTAAGACCATCACTCTTGAGGTCGAGAGCTCC 987786 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||| || || ||||| |||||||| || || || || Sbjct 987787 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGACCAG 987846 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | |||||| ||||| | ||||| | ||| | ||||||||||| Sbjct 987847 CAAAGATTGATCTTCGCCGGTAAACAGCTAGAAGATGGCCGCACCTTGGCCGATTACAAC 987906 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || ||| | || |||||| | || || | ||||| || Sbjct 987907 ATCCAGAAAGAATCAACCCTCCACTTGGTTCTCCGGTTAAGAGGTGGTAT 987956 >seq1208 Length=4595443 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| || || |||||| | |||||||| || | || || Sbjct 3925351 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGATAGAGAGCTCT 3925410 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || ||| ||||| ||||| |||| ||| || | || || Sbjct 3925411 GATACTATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGACATTCCTCAGGACCAG 3925470 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||| | |||||| ||||| ||||||| || ||| | | ||||||||| Sbjct 3925471 CAAAGATTAATCTTCGCCGGTAAACAGCTGGAAGATTGTCGTACCTTGGCAGATTACAAC 3925530 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||| || || | || |||||| | || || | ||||| Sbjct 3925531 ATCCAGAAGGAATCAACGCTCCACTTGGTTCTCCGGTTAGGAGGTGG 3925577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434907831482880