Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq598 105 6e-18 seq1810 89.7 4e-13 >seq598 Length=3584617 Score = 105 bits (116), Expect = 6e-18 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 118489 TAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTGA 118548 || ||||||||||||||||| |||| || || |||||||| ||| || |||| Sbjct 904707 TACACATGAGCATCCCCAATAATATGGATAAAATCACCAGGAACAAGATTGCACACGTGA 904766 Query 118549 GCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCATG 118608 || | |||| | || | | | |||| || | ||||| || ||||| || |||||| Sbjct 904767 GCGAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCCCATG 904826 Query 118609 TCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664 |||||||| | ||| |||| ||| || ||||| ||||| | ||| ||||| ||||| Sbjct 904827 TCTGCTGAACGCTGATACATTTGACACGAGAGTTCCCCTTCTGCCACATAGAACTG 904882 >seq1810 Length=8348134 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 ||||| || ||||| |||||||| || ||||| | ||| |||| ||| || || || || Sbjct 6693803 TTAAACGGTACACCGAGACCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCT 6693862 Query 118645 CCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGT 118704 || ||||||||||||||||| | ||||| |||||||| || |||| | | || Sbjct 6693863 CCATTTGCAACATAAAACTGTGCAAACATGTGGCATGGAGGAAGTGCCATCAACTTAAGA 6693922 Query 118705 TGGGCAGGATTCCAGGC 118721 | | ||||||||| || Sbjct 6693923 TCAGGAGGATTCCAAGC 6693939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414466980008416