Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1177 104 2e-17 seq204 96.9 2e-15 seq1396 87.8 1e-12 seq793 86.0 4e-12 >seq1177 Length=2734319 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| |||||||| || ||||| || || || |||| ||||| ||| || Sbjct 987727 ATGCAAATTTTCGTGAAAACACTAACTGGTAAGACCATCACTCTTGAGGTCGAGAGCTCC 987786 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || ||| || ||||| ||||| |||| ||| | Sbjct 987787 GACACCATCGACAAT--GTTAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGACC 987844 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | || || || ||||| ||||| | || || | |||| |||| ||||||||| Sbjct 987845 AGCAAAGATTGATCTTCGCCGGTAAACAGCTAGAAGATGGCCGCACCTTGGCCGATTACA 987904 Query 27968 ACATCCAAAAAGA 27980 ||||||| ||||| Sbjct 987905 ACATCCAGAAAGA 987917 >seq204 Length=2333866 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||| || || |||||||| || || ||||| || || | || || ||| Sbjct 1139133 AAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAATCA 1139192 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| || ||||| || ||| || || ||||| ||||| | || || Sbjct 1139193 TCCGACACAATCGACAAT--GTGAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCGG 1139250 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| ||||| || ||||||||||||||||| |||| | | | | |||||| Sbjct 1139251 ATCAGCAACGTTTAATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACACTCGCCGATT 1139310 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||||||||| ||||| ||| | |||||||| Sbjct 1139311 ACAACATCCAGAAAGAATCAACTCTTCATTTGGT 1139344 >seq1396 Length=1446835 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || || || | ||||| || || || | || || || ||| || Sbjct 400149 ATGCAAATTTTCGTCAAGACGTTGACTGGAAAGACCATCACTTTGGAGGTGGAGAGCTCC 400208 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| |||||| ||||| ||||| || ||| |||| ||| | Sbjct 400209 GACACCATCGACAAT--GTCAAAGCTAAAATTCAGGACAAGGAGGGTATTCCACCGGACC 400266 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | || || ||||| ||||||||| | || |||| | | ||| | || |||| Sbjct 400267 AGCAGAGATTGATCTTTGCTGGAAAACAACTTGAAGACGGCAGAACTTTGGCTGACTACA 400326 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || ||| || | || ||||| |||||| ||||||| || Sbjct 400327 ACATTCAGAAGGAGTCTACACTTCACTTGGTCTTGCGTCTGCGTGGAGG 400375 Score = 86.0 bits (94), Expect = 4e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGA 27962 ||| ||||| |||| || ||||||||||| || ||||| || | || | |||| | || Sbjct 400490 GGACCAGCAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACCTTGGCGGA 400549 Query 27963 TTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||||| |||||| || | || ||||| |||||| | ||||| ||| Sbjct 400550 TTACAACATCCAGAAAGAGTCAACCCTTCACTTGGTCTTGCGTCTTCGTGGTGGC 400604 >seq793 Length=772624 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| |||||||| || ||||| || || || | || || || ||| | Sbjct 610707 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 610766 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || ||| || || |||||||| |||| ||| | Sbjct 610767 GACACCATCGACAAT--GTTAAGGCAAAGATCCAGGATAAAGAAGGCATTCCTCCGGACC 610824 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | ||||| || ||||| ||||| | || || | || | |||| ||||||||| Sbjct 610825 AGCAAAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACA 610884 Query 27968 ACATCCAAAAAGA 27980 |||| || ||||| Sbjct 610885 ACATTCAGAAAGA 610897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355853968730088