Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq793 212 1e-49 seq1328 188 2e-42 seq1396 185 2e-41 seq1125 168 2e-36 seq1177 167 5e-36 seq204 165 2e-35 seq1208 156 1e-32 seq1470 145 2e-29 seq236 145 2e-29 seq669 104 5e-17 seq861 93.3 1e-13 seq268 89.7 1e-12 seq971 86.0 1e-11 >seq793 Length=772624 Score = 212 bits (234), Expect = 1e-49 Identities = 180/222 (81%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | |||||||||||||| || || || ||||||||||| || || ||||| || Sbjct 611156 ACGAAGACGAAGGACAAGGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCAGCAAGAGT 611097 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||||| ||||| |||||||| || || ||||| || | ||| ||||| ||||| | ||| Sbjct 611096 TCTTCCGTCTTCAAGCTGCTTACCGGCAAAGATGAGCCTTTGCTGGTCCGGAGGGATTCC 611037 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||||| ||| ||||| || || || |||||||| |||||||| | Sbjct 611036 TTCCTTGTCCTGGATCTTTGCTTTGACGTTGTCAATAGTATCAGAGCTCTCAACCTCCAA 610977 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || ||||| || || |||||||| ||||| | |||||| Sbjct 610976 AGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 610935 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || || ||||| || ||||| ||||| || | ||| | |||||| Sbjct 610918 AGAACCAAGTGGAGGGTCGATTCTTTCTGAATGTTGTAATCGGCCAAGGTACGGCCATCT 610859 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| || || |||||||| | | ||| ||||| ||||||| ||||| || ||| Sbjct 610858 TCTAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCGGAGGAATGCCTTCTTTATCC 610799 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| || || || ||||||||||||||||| ||||||||||||||||| ||| Sbjct 610798 TGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTC 610739 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || || || | ||||| Sbjct 610738 TTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 610707 >seq1328 Length=1576597 Score = 188 bits (208), Expect = 2e-42 Identities = 175/222 (79%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | |||| |||||||||||| ||||| || |||||||| ||||||||||| || Sbjct 273330 ACGAAGACGAAGGAGAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCCGCAAGCGT 273271 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || ||||| || || |||||||| | || ||||| ||||| | ||| Sbjct 273270 ACGACCATCCTCGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGAGGGATTCC 273211 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| || || |||||||| || ||||| |||||||| || |||||||| ||||| || Sbjct 273210 TTCTTTATCTTGGATCTTGGCCTTGACGTTATCGATGGTATCTGAGCTTTCGACCTCAAG 273151 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || |||||||| ||||| | |||||| Sbjct 273150 TGTTATAGTCTTCCCTGTAAGAGTCTTAACAAAGATCTGCAT 273109 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210900 CTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA 210959 || || || | ||| || || ||||| ||||| || || | ||| || | || | ||| Sbjct 273095 CTAAGAACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTTATCAGCCAAAGTACGGCCA 273036 Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 ||||| ||||| || || || || ||||| | || ||||| ||||| | ||||||||| Sbjct 273035 TCTTCAAGCTGTTTACCGGCAAAAATAAGTCTCTGCTGGTCCGGAGGGATTCCTTCCTTA 272976 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 || ||||||||| || || || || || ||||| |||||||||||||| ||||| || Sbjct 272975 TCTTGGATCTTTGCCTTAACATTGTCAATTGTGTCGGAGCTTTCAACCTCAAGAGTTATG 272916 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| |||||||||||||| | ||||| Sbjct 272915 GTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCAT 272881 Score = 114 bits (126), Expect = 3e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 || || ||| | || | ||||| || || |||||||| |||||| |||| | |||| | Sbjct 273741 TAGTCTGCAGGAGTGCGACCATCCTCAAGTTGCTTGCCAGCGAAGTTAAGTCTCTGTTCG 273682 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 || || | | ||||||||||| |||||||| || || || || |||||||| ||| Sbjct 273681 TCTGGTTGGATCCCTTCCTTGTCTTGGATCTTGGCCTTTACATTGTCAATGGTGTCTGAG 273622 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||| | ||| || | ||||| || || ||||| || || | |||||| Sbjct 273621 CTTTCAACCTCCAAAGTTATGATTTTTCCGGTAAGGGTCTTGACGAATATCTGCAT 273566 >seq1396 Length=1446835 Score = 185 bits (204), Expect = 2e-41 Identities = 174/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || |||||||| | || || ||||| || || || || || ||||| || | || Sbjct 399914 ACGGAGCCTTAGGACCAAATGGAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAACGT 399855 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || |||||||| || ||||||||||| | || || || ||||||| || Sbjct 399854 ACGGCCATCCTCTAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCCGGAGGAATGCC 399795 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| |||||||| ||| ||||| ||||| |||||||||||||| |||||||| Sbjct 399794 CTCCTTGTCTTGGATCTTGGCTTTAACGTTGTCGATTGTGTCAGAGCTTTCCACCTCGAG 399735 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| ||||||||||| || || | |||||| Sbjct 399734 GGTGATAGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 399693 Score = 185 bits (204), Expect = 2e-41 Identities = 174/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | | ||| | |||||| || |||||||| |||||||| |||||||| | ||| Sbjct 400598 ACGAAGACGCAAGACCAAGTGAAGGGTTGACTCTTTCTGGATGTTGTAATCCGCCAAGGT 400539 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| |||| |||||| || || ||||| | | || ||||| ||||| | ||| Sbjct 400538 ACGACCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGGATTCC 400479 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||| ||||| |||||||| ||||||||||| ||||| || ||||| | Sbjct 400478 TTCCTTATCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCTGAGCTCTCCACCTCCAA 400419 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| ||||||||||| || || | |||||| Sbjct 400418 GGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 400377 Score = 185 bits (204), Expect = 2e-41 Identities = 174/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| ||||| || | |||||| || ||||| || ||||||||||| || || | || Sbjct 400826 ACGAAGCCTTAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCAGCCAAAGT 400767 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || ||||| ||||| |||||||| || || || ||||| ||||||| || Sbjct 400766 GCGACCATCCTCAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACC 400707 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| |||||||| || |||||||||||||| || ||||| | Sbjct 400706 TTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCCACCTCCAA 400647 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || | |||||| || || | |||||| Sbjct 400646 GGTGATAGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 400605 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || || || ||||| ||||| || ||||| || |||||||| || || || ||||| Sbjct 400142 ACGGAGCCTGAGAACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCGAGGGT 400083 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 || || || || || ||||| || |||||||| | | ||| || || || || | || Sbjct 400082 TCTGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCCGGTGGGATACC 400023 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| ||| ||||| ||||| |||||||||||||| |||||||| Sbjct 400022 CTCCTTGTCCTGGATCTTAGCTTTAACGTTGTCGATTGTGTCAGAGCTTTCCACCTCGAG 399963 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || || || || || || | ||||| Sbjct 399962 GGTGATAGTCTTCCCAGTTAGGGTTTTGACGAAAATTTGCAT 399921 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||| || || || || |||||||| || || || || || | || || Sbjct 401044 AGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGACCGTCC 400985 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| || || |||||||| || || || ||||| ||||| | |||||||||||| Sbjct 400984 TCGAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATACCTTCCTTGTCC 400925 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || |||||||| ||||| || ||||| || ||||| ||| Sbjct 400924 TGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTC 400865 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | |||||| || || | |||||| Sbjct 400864 TTCCCGGTTAAAGTCTTCACGAAAATCTGCAT 400833 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | |||||| || ||||| || || ||||| || || || | || || || ||||| Sbjct 400358 GACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTGCCGTCTTC 400299 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || || || || || ||||| | | || ||||| || |||| || ||||||||||| Sbjct 400298 AAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCCTG 400239 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 || || ||| || || ||||||||||| ||||| || ||||| | |||||| ||||| Sbjct 400238 AATTTTAGCTTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCCAAAGTGATGGTCTT 400179 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || | ||||| || || | ||||| Sbjct 400178 TCCAGTCAACGTCTTGACGAAAATTTGCAT 400149 >seq1125 Length=2998257 Score = 168 bits (186), Expect = 2e-36 Identities = 170/221 (77%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||||||||| || || || || |||||||| || || || | ||| | ||| ||| Sbjct 292764 AGGACAAGGTGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGGCTAAGGTTCGTCCGTCT 292823 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || ||||| || | || || ||||| || || | ||||||||||||| Sbjct 292824 TCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCC 292883 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||||||||| || |||||||| ||||| ||| Sbjct 292884 TGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATTGTC 292943 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATGGTT 211123 || ||||| || || || || || | |||||| || || || Sbjct 292944 TTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTTTGCTT 292984 >seq1177 Length=2734319 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || || ||||| |||||||| ||||| || | ||| | |||||| Sbjct 987938 AGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCT 987879 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| || || |||||||| | | ||| ||||| ||||||| |||||||||||| Sbjct 987878 TCTAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGAATGCCTTCCTTGTCC 987819 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| || || || ||||||||||| ||||| || ||||| |||||||| ||| Sbjct 987818 TGGATCTTTGCCTTAACATTGTCGATGGTGTCGGAGCTCTCGACCTCAAGAGTGATGGTC 987759 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || || || | ||||| Sbjct 987758 TTACCAGTTAGTGTTTTCACGAAAATTTGCAT 987727 >seq204 Length=2333866 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 |||||||| || ||||| |||||||| ||||| || || || ||||| ||||||| || Sbjct 1139338 TGAAGAGTTGATTCTTTCTGGATGTTGTAATCGGCGAGTGTTCTTCCGTCTTCCAATTGT 1139279 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || |||||||| | ||||| || || || || | |||||||||||| |||||||| Sbjct 1139278 TTTCCGGCGAAGATTAAACGTTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTTG 1139219 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 |||||| || ||||| ||||| || ||||||||| || || || ||||| ||||| Sbjct 1139218 GCTTTCACATTGTCGATTGTGTCGGATGATTCAACCTCTAGGGTTATTGTCTTCCCCGTT 1139159 Query 211092 AGAGTCTTTACAAACACCTGCATTTT 211117 || || || || || | ||||||||| Sbjct 1139158 AGGGTTTTCACGAAGATCTGCATTTT 1139133 >seq1208 Length=4595443 Score = 156 bits (172), Expect = 1e-32 Identities = 155/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || |||||||||||||||||||| || || ||||| || ||||| || |||||| Sbjct 3925781 TGGAGTGTGGACTCTTTTTGGATGTTGTAGTCAGCAAGTGTGTGACCATCCTCTAGCTGC 3925722 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || | |||||||| || ||||| ||||| | |||||||||||| || ||||| Sbjct 3925721 TTACCACCAAAGATAAGCTTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGAATCTTA 3925662 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| ||||| || || || ||||||||||||||||| | |||||| || || || || Sbjct 3925661 GCTTTAACGTTGTCAATAGTATCAGAGCTTTCAACCTCCAAAGTGATGGTTTTGCCTGTC 3925602 Query 211092 AGAGTCTTTACAAACACCTGC 211112 | ||||| ||||| | |||| Sbjct 3925601 AACGTCTTCACAAAGATCTGC 3925581 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || || || || |||||||| ||||| || | ||| | | |||| Sbjct 3925562 AGAACCAAGTGGAGCGTTGATTCCTTCTGGATGTTGTAATCTGCCAAGGTACGACAATCT 3925503 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| || || |||||||| | | ||| ||||| |||||| ||||||||||| Sbjct 3925502 TCCAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCTGAGGAATGTCTTCCTTGTCC 3925443 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||| || || || ||||| || |||||||| || | ||||||||| || ||| Sbjct 3925442 TGAATCTTTGCCTTAACATTGTCGATAGTATCAGAGCTCTCTATCTCGAGAGTAATGGTC 3925383 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || || || | ||||| Sbjct 3925382 TTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 3925351 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || ||||| ||||||||||| ||||| || || || | ||||||||| |||||| Sbjct 3926009 TGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGCGAGTGTGCGTCCATCTTCGAGCTGC 3925950 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || | ||||| || | || ||||| || || | || |||||||||| ||||| Sbjct 3925949 TTACCGGAAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTCAATCTTC 3925890 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || ||||| ||||| |||| |||||||| | ||| || |||||||| || Sbjct 3925889 GCCTTGACATTATCGATTGTGTCTGAGCCCTCAACCTCCAAAGTAATGGTCTTTCCAGTA 3925830 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||||| ||||| | ||||| Sbjct 3925829 CGGGTCTTCACAAAAATTTGCAT 3925807 Score = 122 bits (134), Expect = 2e-22 Identities = 150/203 (74%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| |||| || |||||||| ||||| || | |||| ||||| Sbjct 3926242 AGAACCAAGTGAAGAGTCGACTACTTCTGGATGTTGTAATCAGCCAAAGTCCAACCATCC 3926183 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| || | |||||||| || | |||| ||| | || | || ||||||||| Sbjct 3926182 TCAAGCTGTTTCACAGCGAAGATGAGTCTCTGTTAGTCTTGTGGGATCCCCTCCTTGTCC 3926123 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||| ||||| ||||| | ||||| | |||||| ||| Sbjct 3926122 TGAATCTTAGCCTTGACATTATCGATTGTGTCTGAGCTCCCGACCTCCAAAGTGATGGTC 3926063 Query 211083 TTTCCCGTGAGAGTCTTTACAAA 211105 ||| ||||| ||||| ||||| Sbjct 3926062 TTT---GTGAG-GTCTTCACAAA 3926044 >seq1470 Length=2917085 Score = 145 bits (160), Expect = 2e-29 Identities = 166/222 (75%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||||||||| ||||| || || || ||||| ||||| || Sbjct 2171974 ACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTG----TTGTAATCAGCAAGAGT 2171919 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 |||||| || || | | || || |||||||| | || ||| ||||| | ||| Sbjct 2171918 CCTTCCGTCATCAATAG---TACCGGCAAAGATAAGTCTCTGATGGAACGGAGGGATTCC 2171862 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||| |||||| |||||||| || || || ||||||||||||||||| | Sbjct 2171861 TTCCTTGTCCTGTATCTTTGCCTTCACGTTATCAATAGTATCAGAGCTTTCAACCTCCAA 2171802 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || || || || |||||||| ||||| | |||||| Sbjct 2171801 AGTAATGGTTTTGCCTGTCAGAGTCTTGACAAAGATCTGCAT 2171760 >seq236 Length=1640546 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || ||||| || || || || |||||||| || || || || || | || ||| Sbjct 1089246 AGGACGAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCT 1089187 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| || || ||||| || | || || ||||| || || | |||||||||||| Sbjct 1089186 TCGAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCT 1089127 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||| || ||||||||||| ||| || ||||| || || || ||| Sbjct 1089126 TGGATCTTCGCTTTCACATTGTCGATGGTGTCTGAGGACTCGACCTCTAGGGTTATGGTC 1089067 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATG 211120 || ||||| || || || || || | |||||| || || Sbjct 1089066 TTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTTTG 1089029 >seq669 Length=253040 Score = 104 bits (114), Expect = 5e-17 Identities = 134/183 (73%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 139807 CTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAG 139866 ||||| ||||| |||||||||||||||||||||||||| ||||||| | || || | | Sbjct 24194 CTTCCGAAGAAACACGGAAGAGGAGGACAATCTGCTCTTCGTTTTGCCCGTCTCCGTATG 24253 Query 139867 GAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAA- 139925 || ||| | ||||| || |||| ||| ||| ||| ||| | ||||| | ||||| Sbjct 24254 GAGAAGCGTCACAATTATGTGAGGAAAACTGCTGAGCTCGCTACACAGTACTACATCAAT 24313 Query 139926 --AGACAACAAGT----GTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAA 139979 || |||||||| | ||| ||||| | || | || ||||| ||||| ||||| Sbjct 24314 CCAG-CAACAAGTCAGCCTAATGTGTCTGGGCTAATTCTTGCCGGTTCAGCAGATTTCAA 24372 Query 139980 GAC 139982 ||| Sbjct 24373 GAC 24375 >seq861 Length=1651656 Score = 93.3 bits (102), Expect = 1e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | | ||||||||||| || | || ||||| ||||| || || ||||| || Sbjct 430858 ACGAAGACGCAACACAAGGTGAAGTGTTGTTTCCTTTTGAATGTTGTAGTCTGCAAGTGT 430799 Query 210953 CCTTCCATCTTCCAGCTGCTT--GCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACT 211010 | ||||| || |||||||| | |||||||| || | |||| ||| || | | | Sbjct 430798 GCGACCATCCTCAAGCTGCTTAGTTCAGCGAAGATGAGTCTCTGTTCGTCTGGTTGGATT 430739 Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTT 211043 |||||||||||||| |||||| ||||| ||| Sbjct 430738 CCTTCCTTGTCCTGAATCTTTGCCTTCACATTT 430706 >seq268 Length=2618192 Score = 89.7 bits (98), Expect = 1e-12 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 139807 CTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAG 139866 || || ||||||||||||||||||||||||||||| || ||||||| | ||| | | | Sbjct 881795 CTCCCGAAGAAGCACGGAAGAGGAGGACAATCTGCGCTTCGTTTTGCTCGTCTTAGGATG 881854 Query 139867 GAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAA- 139925 || ||||| |||||||| | || ||| || ||| || | ||||| || ||||| Sbjct 881855 GAGAAGAGACACAACTATGTTAGGAAAACCGCTGAGCTTGCTACACAGTTTTACATCAAT 881914 Query 139926 --AGACAACAAGT----GTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAA 139979 || | |||||| | ||| |||||| | | | || ||||| || || ||||| Sbjct 881915 CCAG-CTACAAGTCAGCCTAATGTCTCTGGTTTGATCCTTGCTGGTTCAGCTGATTTCAA 881973 Query 139980 GACAAAGCTCCTGGAATCTGACTTTTTTGACCC 140012 || ||||| | || || || ||||| || Sbjct 881974 AACCGAGCTCAGTCAGTCAGAGTTGTTTGATCC 882006 >seq971 Length=4928269 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||| |||||||||||||| || || || |||||||||||| ||| || ||||| Sbjct 2817328 CCTTCTTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCACTGCTCTCGACCTCA 2817387 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||||||| ||||| || || || || || || || | |||||| || Sbjct 2817388 AGAGTGATGGTCTTGCCAGTTAGTGTTTTCACGAAAATCTGCATCTT 2817434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159123128421560