Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq204 129 4e-25 seq793 116 3e-21 seq1177 102 6e-17 seq1208 91.5 1e-13 seq971 91.5 1e-13 >seq204 Length=2333866 Score = 129 bits (142), Expect = 4e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| |||||||| ||||| || || || || || || ||||| || Sbjct 1139133 AAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAATCA 1139192 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | ||| | || | | ||||| ||||| | || || || Sbjct 1139193 TCCGACACAATCGACAATGTGAAAGCCAAGA-TCCAAGACAAGGAAGGAATCCCACCGGA 1139251 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| || |||||||| || ||||| |||||| ||||||||| | | || | | |||||| Sbjct 1139252 TCAGCAACGTTTAATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACACTCGCCGATTA 1139311 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||||| || ||||| || || | ||||| || Sbjct 1139312 CAACATCCAGAAAGAATCAACTCTTCATTTGGT 1139344 >seq793 Length=772624 Score = 116 bits (128), Expect = 3e-21 Identities = 171/238 (72%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 23602 TTACTTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGT 23660 |||||| | ||||| |||||||| ||||| ||||| || || || ||||||||||| || Sbjct 610697 TTACTTCCAGATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGT 610756 Query 23661 TGACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTAC 23719 ||| | | ||||| | || ||| |||| |||| | | || |||||||| | | Sbjct 610757 TGAGAGCTCTGACACCATCGACAATGTTAAGGCAAAGA-TCCAGGATAAAGAAGGCATTC 610815 Query 23720 CGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAG 23779 | || || || || | ||||| || ||||| ||||| || ||||| | || || || | Sbjct 610816 CTCCGGACCAGCAAAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGG 610875 Query 23780 GCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||||||||| || ||||| || || | || || ||| | |||| |||| || Sbjct 610876 CCGATTACAACATTCAGAAAGAATCGACCCTCCACTTGGTTCTCCGGTTAAGAGGTGG 610933 >seq1177 Length=2734319 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| || || || || || |||||||| || || || | | Sbjct 987727 ATGCAAATTTTCGTGAAAACACTAACTGGTAAGACCATCACTCTTGAGGTCGAGAGCTCC 987786 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| |||| |||| | | ||||| ||||| | || || || || Sbjct 987787 GACACCATCGACAATGTTAAGGCAAAGA-TCCAGGACAAGGAAGGCATTCCTCCGGACCA 987845 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | || || || ||||| ||||| || ||||| | ||||| || | ||||||||| Sbjct 987846 GCAAAGATTGATCTTCGCCGGTAAACAGCTAGAAGATGGCCGCACCTTGGCCGATTACAA 987905 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || ||||| || || | || || ||| | |||| |||| || Sbjct 987906 CATCCAGAAAGAATCAACCCTCCACTTGGTTCTCCGGTTAAGAGGTGG 987953 >seq1208 Length=4595443 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/236 (69%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| ||||| || || || || |||||||| | || | | Sbjct 3925351 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGATAGAGAGCTCT 3925410 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | || ||| |||| |||| | || ||||| |||| | || | || || Sbjct 3925411 GATACTATCGACAATGTTAAGGCAAAGA-TTCAGGACAAGGAAGACATTCCTCAGGACCA 3925469 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | ||||| || ||||| ||||| |||||||| || || || | |||||||| Sbjct 3925470 GCAAAGATTAATCTTCGCCGGTAAACAGCTGGAAGATTGTCGTACCTTGGCAGATTACAA 3925529 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCAGCAG 23845 ||| || || || || || | || || ||| | |||| |||| || | ||||| Sbjct 3925530 CATCCAGAAGGAATCAACGCTCCACTTGGTTCTCCGGTTAGGAGGTGG-TAAGCAG 3925584 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || |||| || ||||| || || ||| | || ||||| | | Sbjct 3925807 ATGCAAATTTTTGTGAAGACCCGTACTGGAAAGACCATTACTTTGGAGGTTGAGGGCTCA 3925866 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | ||| ||||| || || | || ||||| || Sbjct 3925867 GACACAATCGATAATGTCAAGGCGAAGA-TTGAGGACAAGGAGGGGATCCCACCAGACCA 3925925 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||| |||| || || || ||||| | |||||| | | |||||||| Sbjct 3925926 GCAGAGACTCATCTTTTCCGGTAAGCAGCTCGAAGATGGACGCACACTCGCTGATTACAA 3925985 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| ||||| ||||| || | ||||| || Sbjct 3925986 CATCCAAAAGGAGTCTACCCTCCATTTGGT 3926015 >seq971 Length=4928269 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 |||||||| ||| |||| || |||||||| | | |||||||| || || ||||| ||| Sbjct 3107586 GACAAAGAGGGTATACCACCCGATCAACAAAGGCTGATATTTGCTGGTAAGCAACTCGAA 3107527 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | || || |||| ||||||||||| || |||||||| || | ||| | || || Sbjct 3107526 GATGGCCGAACCTTAGCGGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTTG 3107467 Query 23824 AGGTTGCGAGGAGGA 23838 ||| | |||| ||| Sbjct 3107466 AGGCTCAGAGGTGGA 3107452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338001591707552