Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1639 172 8e-38 seq1604 96.9 5e-15 >seq1639 Length=5101707 Score = 172 bits (190), Expect = 8e-38 Identities = 409/608 (67%), Gaps = 25/608 (4%) Strand=Plus/Plus Query 48137 TAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 48196 ||| || || ||||| || || | ||||| |||| || |||||||| || || || Sbjct 2279747 TAAGCAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATCAATTCGTTTGAGAAAGT 2279806 Query 48197 GAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAA 48255 | || ||||| || || ||||| || ||||| || || | || |||| | ||||| | Sbjct 2279807 TAACCCAGGCATGAGACCTCGTTTCTTAAGCCAGAAGATGGA-GCAAAAGCTTCCAGAGA 2279865 Query 48256 AGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTG---GCTTCGT 48312 |||| |||||||| || || || || || || || || | | | | ||| Sbjct 2279866 AGAAGATGCCTTCAACACAAGCGAAAGCTACAATTCGTTCAGCGAAGGTTTGAGATCCGT 2279925 Query 48313 TGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAG 48372 | ||||| ||||| | ||| |||||| || ||||| || ||||| || | Sbjct 2279926 CG---ATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATCG 2279982 Query 48373 CATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTAT 48432 | ||| ||| | | | || ||| ||||||| | || ||||| | | ||||||| Sbjct 2279983 CGCGAAATAGATGATCTCTCTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTAT 2280042 Query 48433 ACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTG 48492 |||| ||||||||||| |||||||| || ||||| || || || ||| | ||| || | Sbjct 2280043 ACATCTCGGAGTGAATGTTTTCAATCGCGATCTGGAAACCATAGAAAGCACGCGCCTCCG 2280102 Query 48493 TGATCTGTACCTCCGTACA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTA 48551 || || || | || ||| ||||| ||| | |||||| || ||||| ||| Sbjct 2280103 AGACTTGAACAT-CGGACATGAATCGAGAAGCGAGATTCTCTAACACGATTCCGTCAGAT 2280161 Query 48552 GCAGCAAAAAATGCTAATACATGTTTAATAAAAT-ATTTT-----TCGTTGGAAGTCAGT 48605 || || || || || | || ||||| || || | | || |||||| | | Sbjct 2280162 GCGGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTGAGATT---G 2280218 Query 48606 TTATTCCAGTC---ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGAT 48662 || | ||| || |||| |||| ||||| ||||||||||||||| ||||| || ||| Sbjct 2280219 TTCTCCCAATCGCGATTG---TCTTGTGATAGATCTACTTCTTCAGCGGTCCAGAACGAT 2280275 Query 48663 GCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAAT 48722 || || ||||| || ||||| | ||| || || ||| ||||||||||| ||| ||| Sbjct 2280276 GCTTCGGCTTTCTTGTACATCTCCCAGATCTCTGGGTAGTGGATTGGGAACATACAGAAT 2280335 Query 48723 CTATTTGG 48730 || | ||| Sbjct 2280336 CTGTCTGG 2280343 >seq1604 Length=1253100 Score = 96.9 bits (106), Expect = 5e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| || || | ||| | || || | || | || | || |||||||| |||||| Sbjct 402930 CCTCCTTGGTCAACATAACGAGCAGTATCGTTGAATACACGCAGCATTGGAACAATACCA 402989 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||||||||||||||| ||| ||| ||||||||| |||| ||||||||| | || Sbjct 402990 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAGCTGAA 403049 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGAT-ATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || || || || | || || | | || | ||| || ||| | ||| || || || Sbjct 403050 ACACCAATACCACCAG-CAGATTTGCTAATAACAGCACACTCTTTGAGTGTTTCATATAT 403108 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || || ||||| ||||| | ||||| ||||| Sbjct 403109 GCCCTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 403150 Score = 93.3 bits (102), Expect = 6e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 |||||||| || || | || ||||||||||| || |||||| | | ||| | | || | Sbjct 403270 GTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATGG 403329 Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517 || |||| || || || || || || | ||| ||||| || || ||||| | ||||| Sbjct 403330 TAAGTTTGTATTGCGGAATCAATATCATCCTTG-TGAATGCCAACAGCTACCCTCATCAG 403388 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| || ||||| |||||||| || | | ||| || | ||||||| | || | Sbjct 403389 CATGTGTTGAGGCCTTTCAACAACTTTCCCTTGGACTTTTAAGAGGTATGATCTCTCAAG 403448 Query 78578 AGTTTTAAAACCAAA 78592 ||||||||| ||||| Sbjct 403449 AGTTTTAAATCCAAA 403463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694651919548160