Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1639 199 6e-46 seq1604 111 2e-19 >seq1639 Length=5101707 Score = 199 bits (220), Expect = 6e-46 Identities = 595/900 (66%), Gaps = 35/900 (4%) Strand=Plus/Plus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 |||||||| ||||| ||||||||||||||||| || ||||| || | | || || | Sbjct 2279460 TTTTGGTAATCACCAACACGTTTCTCGAAAAAGTTGGTTTTCCCCTGAAGAGAGATTAGT 2279519 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| ||||||| |||||||| || || | || | || | | | Sbjct 2279520 TCCATCCAATCAAAGGGATTAGTCGCACCGTACACCTTACCGTACCCAAGAGCACCCAAA 2279579 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 || ||||| ||||| || || |||||| |||||| |||| ||||| || | | Sbjct 2279580 AGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATACCAACCAAC 2279639 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 | ||| || || || | ||||||| ||||| ||| ||||| | | || Sbjct 2279640 GCGCACGGAAGCGCGTCGCACACAAACTCTCTCTCAATCTCGACCGCATCACAAACGATT 2279699 Query 46579 GA--TGTTACTGT-TTC-CTCA-CTTGGTG--GATGCATCAAATGTTTAAACATTAAACA 46631 || || ||| | ||| |||| ||| || || | | ||| || | ||| || Sbjct 2279700 GACTTGATACGTTCTTCACTCAGCTTTGTTTTGAGG-----AGTGTGTAGAG--TAAGCA 2279752 Query 46632 TGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCC 46691 || ||||| || || | |||||| |||| || |||||||| || || || | ||| Sbjct 2279753 AGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATCAATTCGTTTGAGAAAGTTAACCC 2279812 Query 46692 AGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAATA 46750 |||||| || || || || || ||||| || || | || |||| | ||||| ||||| | Sbjct 2279813 AGGCATGAGACCTCGTTTCTTAAGCCAGAAGATGGA-GCAAAAGCTTCCAGAGAAGAAGA 2279871 Query 46751 TGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACT--GGCATCATTATGAAT 46808 ||||||| ||| ||||| || |||| || || || | | | ||| | || Sbjct 2279872 TGCCTTCAACACAAGCGAAAGCTACAATTCGTTCAGCGAAGGTTTGAGATCCGTCG--AT 2279929 Query 46809 CCACCTTTGA--GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 ||| ||| | ||||| | ||| || ||| || ||||| || ||||| || || | Sbjct 2279930 CCA--TTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATCGCGCGA 2279987 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 || ||| | | | || | ||||||| | ||| ||||| | | ||||||||||| Sbjct 2279988 AATAGATGATCTCTCTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACATC 2280047 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || || |||||||||||||| || ||||| || || || ||| | || || | | Sbjct 2280048 TCGGAGTGAATGTTTTCAATCGCGATCTGGAAACCATAGAAAGCACGCGCCTCCGAGACT 2280107 Query 46987 TGTACCTCTGTACAA-AATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGC 47045 || || || | ||| ||||| || | |||||| ||| ||||| ||| || || Sbjct 2280108 TGAACATCGG-ACATGAATCGAGAAGCGAGATTCTCTAACACGATTCCGTCAGATGCGGC 2280166 Query 47046 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTC---CA 47102 || || || | || ||||| || || | |||| || | || || ||| || Sbjct 2280167 GAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTCTCCCA 2280226 Query 47103 GTC---ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159 || |||| |||| ||||| ||||||||||||||| |||||||| || || || || Sbjct 2280227 ATCGCGATTG---TCTTGTGATAGATCTACTTCTTCAGCGGTCCAGAACGATGCTTCGGC 2280283 Query 47160 TTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGG 47219 ||| || ||||| | ||| || || | || ||||| || || ||| ||||| | ||| Sbjct 2280284 TTTCTTGTACATCTCCCAGATCTCTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGG 2280343 >seq1604 Length=1253100 Score = 111 bits (122), Expect = 2e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| || || | ||| | ||||| | || | || | || |||||||| ||| || Sbjct 402930 CCTCCTTGGTCAACATAACGAGCAGTATCGTTGAATACACGCAGCATTGGAACAATACCA 402989 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| |||||||| ||| ||| ||||||||| ||||||||||||| | || Sbjct 402990 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAGCTGAA 403049 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || || || || ||| || | |||||| ||| | ||| ||||| ||| Sbjct 403050 ACACCAATACCACCAGCAGATTTGCTAATAACAGCACACTCTTTGAGTGTTTCATATATG 403109 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || |||||||| ||||| | ||||| ||||| Sbjct 403110 CCCTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 403150 Score = 96.9 bits (106), Expect = 5e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 |||||||| || || | |||||||||||||||||||||||| | | ||| | | || | Sbjct 403270 GTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATGG 403329 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 || |||| || | | || ||||| | ||| ||||| || ||||| || | ||||| Sbjct 403330 TAAGTTTGTATTGCGGAATCAATATCATCCTTG-TGAATGCCAACAGCTACCCTCATCAG 403388 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| || ||||| | ||| ||| || | | ||| || | ||||||| | || | Sbjct 403389 CATGTGTTGAGGCCTTTCAACAACTTTCCCTTGGACTTTTAAGAGGTATGATCTCTCAAG 403448 Query 77173 AGTTTTAAAACCAAA 77187 ||||||||| ||||| Sbjct 403449 AGTTTTAAATCCAAA 403463 Score = 87.8 bits (96), Expect = 3e-12 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 76085 AGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTG 76144 ||||||||||||||||| || || || || || ||||||||||||||||| | | | || Sbjct 401638 AGAATAAATGCATCTGCAAGACCTTGTACACCGATACCAATAGGTCTATGACGCATGTTT 401697 Query 76145 GAAATTTCAGC-TTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT 76200 ||| ||| || ||| | ||| || ||||| | |||||| || ||||||||||| Sbjct 401698 GAAGTTTTTGCAGTCT-CCACAGGATAGTAATTCACATCTATTATCTTATTGAGATT 401753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712917075694080