Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq3 140 4e-28 seq178 123 3e-23 >seq3 Length=3374423 Score = 140 bits (154), Expect = 4e-28 Identities = 138/176 (78%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 171004 TTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGTGCTT 171063 |||||||||| ||||| ||||| ||| | |||||| || || || ||||||||| ||| Sbjct 1010028 TTCTTGATGCGGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCTT 1009969 Query 171064 GTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCTTTCC 171123 |||||| ||||||||| ||| ||| | ||| |||||||| || || || || ||||| Sbjct 1009968 GTTCGAGCTGTGCTGGTAAAGTTGCGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCC 1009909 Query 171124 TTGATGATGATCAGATTGAATC-AGGTTTCATTCTGACCTGCGTCTCATATCCTAC 171178 |||||||||| |||||| |||| ||| || |||| || || || | |||||||| Sbjct 1009908 TTGATGATGACCAGATT-AATCAAGGGTTTGTTCTCACTTGTGTGGCTTATCCTAC 1009854 >seq178 Length=2153606 Score = 123 bits (136), Expect = 3e-23 Identities = 135/178 (76%), Gaps = 1/178 (1%) Strand=Plus/Plus Query 183549 TTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGC 183608 || |||||| ||||||||||||||||| |||||| ||| | |||||||| ||||| Sbjct 356578 TTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAACTCCTGTTGCAGCTGC 356637 Query 183609 AACC-GCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCC 183667 || ||||| ||| || ||||||| | || || || |||| |||||||||||| | Sbjct 356638 GACTTGCTGTTTTCTTGATCTATCCAATTGGGCAGGGAAGTTTTTCTGATGGTATGCCTC 356697 Query 183668 TGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCT 183725 | || ||| ||| || || |||| |||| |||| |||| || ||||||||||| || Sbjct 356698 TAGGAATCTCTGGTACTTTCAACTTTATGATTGTACTCCAGGCTGAGCACAACATTCT 356755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622055283689280