Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq178 141 1e-28 seq3 93.3 5e-14 seq268 91.5 2e-13 >seq178 Length=2153606 Score = 141 bits (156), Expect = 1e-28 Identities = 143/185 (77%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 164274 AACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCG 164333 ||||| || |||||| |||||||||||||||||| || ||||| || ||||||| | Sbjct 356571 AACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAACTCCTGTTG 356630 Query 164334 CTGCAGCGAGT-GCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCA 164392 | || |||| | || || ||| || ||||||| | || || || ||| ||||||| Sbjct 356631 CAGCTGCGACTTGCTGTTTTCTTGATCTATCCAATTGGGCAGGGAAGTTTTTCTGATGGT 356690 Query 164393 ATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAAC 164452 |||||||| || |||||||| || ||||||| ||| | || ||||||||||||||||| Sbjct 356691 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTACTCCAGGCTGAGCACAAC 356750 Query 164453 ATCCT 164457 || || Sbjct 356751 ATTCT 356755 >seq3 Length=3374423 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 161539 GTGTGAAGACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTA 161598 |||||| |||||| ||| ||||||| || ||||||||||| || | || | || Sbjct 1010048 GTGTGACGACGACGTTTACGTTCTTGATGCGGCTGAGGAAGCTGGAATCGATTTGCCTTA 1009989 Query 161599 CTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGA 161658 ||| || ||||| || |||||||| || || || ||| | | ||||| | || || Sbjct 1009988 CTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAAGTTGCGTCTGGATCTGTTGA 1009929 Query 161659 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTG 161718 ||| |||||| ||||| || |||||||| || || || || |||| ||||| Sbjct 1009928 CCAGTCTGACCAGAGTTTCCTTGATGATGACCAGATTAATCAAGGGTTTGTTCTCACTTG 1009869 Query 161719 TGTTTCTTATCCCACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGA 161769 ||| ||||||| || ||| | ||||| || | |||||||| || Sbjct 1009868 TGTGGCTTATCCTACTTCTGATGTTACCATTGAAACCCACAAAGAAGACGA 1009818 >seq268 Length=2618192 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 161539 GTGTGAAGACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTA 161598 ||| ||||| ||| ||| | || ||||| || |||||||| || | ||| | ||| Sbjct 1977069 GTGCGAAGAAGACGTCTACGTCCTCGACGCTGCAGAGGAAGCCGGAATCGACTTGCCCTA 1977010 Query 161599 CTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGA 161658 ||| || ||||| || |||| || ||||| || ||| ||||||||||| |||| || Sbjct 1977009 CTCATGCCGTGCCGGATCTTGCTCAAGTTGCGCCGGGAAAGTCGTCTCTGGCTCCGTTGA 1976950 Query 161659 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTG 161718 ||| |||||| |||| | |||||||| || || | ||| | | |||| || Sbjct 1976949 CCAGTCGGACCAGAGCTTCTTAGACGATGAGCAGATAAACGATGGGTATGTCTTGACCTG 1976890 Query 161719 TGTTTCTTATCCCACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGA 161766 ||| ||||||| || ||| || || || || | |||||||| Sbjct 1976889 TGTGGCTTATCCGACTTCTGATGTCGTCATCGAAACCCACAAAGAAGA 1976842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557640848998080