Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq3 104 3e-17 seq178 100 3e-16 >seq3 Length=3374423 Score = 104 bits (114), Expect = 3e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 176152 TTGAGTGTGCTGACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCA 176211 ||||||||| ||||| || |||| ||||| ||||||||||| ||| | || | Sbjct 1010052 TTGAGTGTGACGACGACGTTTACGTTCTTGATGCGGCTGAGGAAGCTGGAATCGATTTGC 1009993 Query 176212 ACTACTCGTGCCGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGG 176271 ||||| ||||| |||||| | |||||||| ||||| || ||| | || || | | Sbjct 1009992 CTTACTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAAGTTGCGTCTGGATCTG 1009933 Query 176272 TAGATCAAAGCGATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGA 176331 | || || || || |||||||||||||||||||| || ||| || |||| | Sbjct 1009932 TTGACCAGTCTGACCAGAGTTTCCTTGATGATGACCAGATTAATCAAGGGTTTGTTCTCA 1009873 Query 176332 CTTGTGTTTCATATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGA 176386 ||||||| | |||||||| ||| | ||||| || | |||||||| || Sbjct 1009872 CTTGTGTGGCTTATCCTACTTCTGATGTTACCATTGAAACCCACAAAGAAGACGA 1009818 >seq178 Length=2153606 Score = 100 bits (110), Expect = 3e-16 Identities = 134/185 (72%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 177944 AACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCG 178003 ||||| || ||| || ||||||||||| ||||| ||| ||||| || |||| || | Sbjct 356571 AACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAACTCCTGTTG 356630 Query 178004 CCGCAGCATCT-GCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCT 178062 | || || || ||||| ||| | | ||||| | || || || ||| ||||| | | Sbjct 356631 CAGCTGCGACTTGCTGTTTTCTTGATCTATCCAATTGGGCAGGGAAGTTTTTCTGATGGT 356690 Query 178063 ATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 178122 ||||| || || ||| ||| || ||||||| ||| |||| |||| || ||||||||| Sbjct 356691 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTACTCCAGGCTGAGCACAAC 356750 Query 178123 ATCCT 178127 || || Sbjct 356751 ATTCT 356755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596292709735040