Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq236 174 3e-38 seq1396 168 1e-36 seq1177 161 2e-34 seq793 158 3e-33 seq1125 156 9e-33 seq1208 154 3e-32 seq204 150 4e-31 seq1328 149 1e-30 seq1639 98.7 2e-15 seq1470 86.0 1e-11 >seq236 Length=1640546 Score = 174 bits (192), Expect = 3e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || ||||| | ||| ||| || |||||||||||||| || Sbjct 1089262 ACCACCACGGAGACGGAGGACGAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGGC 1089203 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| || || || ||||||||||| || ||||| || || ||||| || Sbjct 1089202 GAGAGTGCGGCCGTCTTCGAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGG 1089143 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||||||||||||||| ||||| || | ||||| ||||| || | ||||| Sbjct 1089142 GATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATGGTGTCTGAGGACTCGAC 1089083 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || || || ||||| ||||| | || || ||||| |||||||| || Sbjct 1089082 CTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 1089032 >seq1396 Length=1446835 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || | || |||| ||| | ||| ||| || || || ||||| ||||| Sbjct 399920 ACCACCACGGAGCCTTAGGACCAAATGGAGGGTGGATTCCTTCTGAATATTGTAATCAGC 399861 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||| |||||||||||||| || || || || ||||| | | || || || || Sbjct 399860 CAACGTACGGCCATCCTCTAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCCGGAGG 399801 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||||||||||||||| ||||| ||| | ||||| ||||| || ||| || Sbjct 399800 AATGCCCTCCTTGTCTTGGATCTTGGCTTTAACGTTGTCGATTGTGTCAGAGCTTTCCAC 399741 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | |||||||||||| |||||||| Sbjct 399740 CTCGAGGGTGATAGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 399693 Score = 165 bits (182), Expect = 2e-35 Identities = 176/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 |||||||||| || || || |||| || | || ||| || |||||||||||||||| Sbjct 401061 AACCACCACGGAGACGGAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAG 401002 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 | || ||||| || ||||| || ||||| || || ||||| | ||| || ||||| | Sbjct 401001 CCAGTGTGCGACCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAG 400942 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCG 283049 | ||||| |||||||| |||||||| || || ||| | || || |||| || |||| || Sbjct 400941 GGATACCTTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGT-CGGAGCTCTCC 400883 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || ||||| ||||| || || |||||||| ||||| |||||||| Sbjct 400882 ACCTCCAGTGTGATGGTCTTCCCGGTTAAAGTCTTCACGAAAATCTGCAT 400833 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || | || || ||||| | || || || ||||||||||||||||| Sbjct 400148 ACCACCACGGAGCCTGAGAACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGC 400089 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | ||| ||||| ||||| || ||||| |||||||| | ||| || || || Sbjct 400088 GAGGGTTCTGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCCGGTGG 400029 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| ||||| ||| | ||||| ||||| || ||| || Sbjct 400028 GATACCCTCCTTGTCCTGGATCTTAGCTTTAACGTTGTCGATTGTGTCAGAGCTTTCCAC 399969 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | || || ||||| || ||||| Sbjct 399968 CTCGAGGGTGATAGTCTTCCCAGTTAGGGTTTTGACGAAAATTTGCAT 399921 Score = 149 bits (164), Expect = 1e-30 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || | || |||| || | || || || |||||||| |||||||| Sbjct 400832 ACCACCACGAAGCCTTAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCAGC 400773 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||||| |||||||| || ||||| || || ||||| | ||| || ||||| || Sbjct 400772 CAAAGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 400713 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGA 283050 |||||| |||||||| |||||||| || || ||| | || || ||||| || ||| || | Sbjct 400712 AATACCTTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCAGA-GCTCTCCA 400654 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || | ||||| || || || ||||||||||| ||||| |||||||| Sbjct 400653 CCTCCAAGGTGATAGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 400605 Score = 145 bits (160), Expect = 2e-29 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| |||||||| || | |||| || | || || || || |||||||||||||| Sbjct 400376 ACCTCCACGCAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGC 400317 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || | ||| || || |||||||| || ||||||||||| | || ||||| || Sbjct 400316 CAAAGTTCTGCCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGTGG 400257 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGA 283050 ||||||||||||||| || || || ||||| || | ||||| |||| || |||| || | Sbjct 400256 AATACCCTCCTTGTCCTGAATTTTAGCTTTGACATTGTCGATGGTGT-CGGAGCTCTCCA 400198 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || | |||||| ||||| || ||||| ||||| ||||| || ||||| Sbjct 400197 CCTCCAAAGTGATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 400149 Score = 125 bits (138), Expect = 1e-23 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || | |||| || | || ||||| ||||||||||| || || Sbjct 400603 CCACCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCTTTCTGGATGTTGTAATCCGCC 400544 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || |||||||| | || || |||||||||||||| | || ||||| || Sbjct 400543 AAGGTACGACCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGG 400484 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGAC 283051 || || ||||| || || ||||| || || ||| | ||||| ||||| | |||| || || Sbjct 400483 ATTCCTTCCTTATCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCTG-AGCTCTCCAC 400425 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| || || | |||||| ||||| |||||||| Sbjct 400424 CTCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 400377 >seq1177 Length=2734319 Score = 161 bits (178), Expect = 2e-34 Identities = 153/193 (79%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||| ||||||||||| || || | ||||||||||| ||||| ||||| ||||| || Sbjct 987918 TTCTTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCTAGCTGTTTACCGGCGAA 987859 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| | ||| ||||| ||||| || |||||||| ||||||||||| || || | Sbjct 987858 GATCAATCTTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATT 987799 Query 283028 ATCGATAGTGTCCGAAGCT-TCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAA 283086 ||||| |||| || |||| ||||| || |||||||| |||||||| || | || || | Sbjct 987798 GTCGATGGTGT-CGGAGCTCTCGACCTCAAGAGTGATGGTCTTACCAGTTAGTGTTTTCA 987740 Query 283087 CGAATATCTGCAT 283099 |||| || ||||| Sbjct 987739 CGAAAATTTGCAT 987727 >seq793 Length=772624 Score = 158 bits (174), Expect = 3e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| || || || | || ||| |||||||||||||||||||| Sbjct 611162 ACCACCACGAAGACGAAGGACAAGGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCAGC 611103 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || | || || || || || || ||||||||||| | | ||| ||||| || Sbjct 611102 AAGAGTTCTTCCGTCTTCAAGCTGCTTACCGGCAAAGATGAGCCTTTGCTGGTCCGGAGG 611043 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGA 283050 || || |||||||| |||||||||||||| ||| | || ||||| || | |||| || | Sbjct 611042 GATTCCTTCCTTGTCCTGGATCTTTGCTTTGACGTTGTCAATAGTATCAG-AGCTCTCAA 610984 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || | ||| || ||||| || |||| |||||| || || |||||||| Sbjct 610983 CCTCCAAAGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 610935 Score = 134 bits (148), Expect = 3e-26 Identities = 147/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||| || |||||||| || || | || |||||||| ||||| ||||| ||||| || Sbjct 610898 TTCTTTCTGAATGTTGTAATCGGCCAAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAA 610839 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| || | ||| ||||| ||||| || || || || ||||||||||| || || | Sbjct 610838 GATTAATCTTTGCTGGTCCGGAGGAATGCCTTCTTTATCCTGGATCTTTGCCTTAACATT 610779 Query 283028 ATCGATAGTGTCCGAAGCT-TCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAA 283086 ||||| ||||| || ||| || || ||||||||||| ||||| || || | || || | Sbjct 610778 GTCGATGGTGTCAGA-GCTCTCAACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCA 610720 Query 283087 CGAATATCTGCAT 283099 |||| || ||||| Sbjct 610719 CGAAAATTTGCAT 610707 >seq1125 Length=2998257 Score = 156 bits (172), Expect = 9e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| || || || | ||| ||| || |||||||||||||| || Sbjct 292748 ACCACCACGGAGACGAAGGACAAGGTGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGGC 292807 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || || || || || || || ||||| || ||||| || || ||||| || Sbjct 292808 TAAGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGTGG 292867 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| |||||||| || || || | ||||| ||||| |||| ||||| Sbjct 292868 GATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCGAC 292927 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| ||||| ||||| ||||| | || || ||||| |||||||| || Sbjct 292928 CTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 292978 >seq1208 Length=4595443 Score = 154 bits (170), Expect = 3e-32 Identities = 172/227 (76%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || ||||| |||| ||| | ||| ||||||||||||||||||||||| Sbjct 3925806 ACCACCTCCGAGACGAAGCACCAAATGGAGTGTGGACTCTTTTTGGATGTTGTAGTCAGC 3925747 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGT-TGTTGGTCACCCG 282990 ||| ||| | ||||||||||| || || || ||||||| || | | || ||||| | Sbjct 3925746 AAGTGTGTGACCATCCTCTAGCTGCTTACCACCAAAGAT-AAGCTTCTGCTGGTCCGGAG 3925688 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 | || || ||||||||||| ||||| ||||| ||| | || ||||| || || ||| | Sbjct 3925687 GGATTCCTTCCTTGTCTTGAATCTTAGCTTTAACGTTGTCAATAGTATCAGAGCTTTCAA 3925628 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGC 283097 | || | |||||| || || || ||||| ||||| || || |||||| Sbjct 3925627 CCTCCAAAGTGATGGTTTTGCCTGTCAACGTCTTCACAAAGATCTGC 3925581 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || ||||| |||| ||| | || || |||||||||||||| ||||| Sbjct 3926034 ACCACCTCCGAGACGAAGCACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGC 3925975 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| ||||| || || || || |||| |||||| | | || ||||| || Sbjct 3925974 GAGTGTGCGTCCATCTTCGAGCTGCTTACCGGAAAAGATGAGTCTCTGCTGGTCTGGTGG 3925915 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| | ||||| || || || ||||||| ||||| || | || || Sbjct 3925914 GATCCCCTCCTTGTCCTCAATCTTCGCCTTGACATTATCGATTGTGTCTGAGCCCTCAAC 3925855 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||| || ||||| || || ||||| || || || ||||| Sbjct 3925854 CTCCAAAGTAATGGTCTTTCCAGTACGGGTCTTCACAAAAATTTGCAT 3925807 Score = 113 bits (124), Expect = 9e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | | || || |||| || | ||| ||| || ||||||||||| || || Sbjct 3925578 ACCACCTCCTAACCGGAGAACCAAGTGGAGCGTTGATTCCTTCTGGATGTTGTAATCTGC 3925519 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || | ||| || || ||||| ||||| ||||| || | ||| ||||| || Sbjct 3925518 CAAGGTACGACAATCTTCCAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCTGAGG 3925459 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGA 283050 ||| | |||||||| || |||||||| || || | |||||||| || | |||| || | Sbjct 3925458 AATGTCTTCCTTGTCCTGAATCTTTGCCTTAACATTGTCGATAGTATCAG-AGCTCTCTA 3925400 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| || ||||| || || | || || ||||| || ||||| Sbjct 3925399 TCTCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 3925351 Score = 95.1 bits (104), Expect = 3e-14 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || ||||||||||| ||||| | || | |||||||| || |||||| | || ||||| Sbjct 3926218 TTCTGGATGTTGTAATCAGCCAAAGTCCAACCATCCTCAAGCTGTTTCACAGCGAAGATG 3926159 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | | |||| ||| || || ||||||||||| || ||||| || || || ||||| Sbjct 3926158 AGTCTCTGTTAGTCTTGTGGGATCCCCTCCTTGTCCTGAATCTTAGCCTTGACATTATCG 3926099 Query 283032 ATAGTGTCCGAAGCT-TCGACTTCGAGAGTGATCGTCTT 283069 || ||||| | |||| |||| || | |||||| ||||| Sbjct 3926098 ATTGTGTCTG-AGCTCCCGACCTCCAAAGTGATGGTCTT 3926061 >seq204 Length=2333866 Score = 150 bits (166), Expect = 4e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 || ||||| |||| ||| | || |||||| ||||||||||| || || || || | Sbjct 1139353 AGACGAAGCACCAAATGAAGAGTTGATTCTTTCTGGATGTTGTAATCGGCGAGTGTTCTT 1139294 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 || || || | |||||| ||||| ||||| |||||||| || || || || || ||| Sbjct 1139293 CCGTCTTCCAATTGTTTTCCGGCGAAGATTAAACGTTGCTGATCCGGTGGGATTCCTTCC 1139234 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 |||||||||||||| ||||| || | ||||| ||||| || | ||| || || || || Sbjct 1139233 TTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCGGATGATTCAACCTCTAGGGTT 1139174 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || ||||| ||||| | || || ||||| ||||||||||| Sbjct 1139173 ATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 1139133 >seq1328 Length=1576597 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| | || || | || || || ||||||||||| || ||| Sbjct 273335 CCACCACGAAGACGAAGGAGAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCCGCA 273276 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| || |||||||| ||||| || ||||||||||| | | || ||||| || Sbjct 273275 AGCGTACGACCATCCTCGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGAGGG 273216 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || || ||||||||||| || || ||| ||||||| || || || |||||| Sbjct 273215 ATTCCTTCTTTATCTTGGATCTTGGCCTTGACGTTATCGATGGTATCTGAGCTTTCGACC 273156 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || || | ||||||||| || |||||||| Sbjct 273155 TCAAGTGTTATAGTCTTCCCTGTAAGAGTCTTAACAAAGATCTGCAT 273109 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||| || |||| ||||| | || |||||||| || || ||||| |||||||| Sbjct 273071 TCCTTTTGAATATTGTTATCAGCCAAAGTACGGCCATCTTCAAGCTGTTTACCGGCAAAA 273012 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | || ||||| || || || ||||| |||||||||||||| || || | Sbjct 273011 ATAAGTCTCTGCTGGTCCGGAGGGATTCCTTCCTTATCTTGGATCTTTGCCTTAACATTG 272952 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || ||||| || ||| || || ||||| || ||||| ||||| | |||||| || Sbjct 272951 TCAATTGTGTCGGAGCTTTCAACCTCAAGAGTTATGGTCTTGCCCGTAAGAGTCTTTACA 272892 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 272891 AAGATTTGCAT 272881 Score = 111 bits (122), Expect = 3e-19 Identities = 165/230 (72%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || ||||||||| ||| | || |||||| |||| |||||||||||| Sbjct 273565 ACCACCTCTTAGAAGAAGTACCAAATGCAGAGTTGATTCTTTCTGGACGTTGTAGTCAGC 273506 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAA-ACGTTGTTGGTCACCCG 282990 ||| ||||| |||||||| || ||||| || || ||||| || | |||||||| Sbjct 273505 AAGAGTGCGACCATCCTCAAGATGTTTGCCAGCGAAGATAAAGTCTCTGTTGGTCTAGTT 273446 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCG 283049 | || || || || ||||| ||||| || || || | || || |||| | |||| || Sbjct 273445 GGATTCCTTCTTTTTCTTGAATCTTCGCCTTGACATTGTCAATGGTGTGAG-AGCTCTCA 273387 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| || || || || || | || | || || || ||||| Sbjct 273386 ACTTCTAGAGTAATGGTTTTTCCAGTGAGGGTTTCCACAAACATTTGCAT 273337 Score = 100 bits (110), Expect = 6e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||| ||| | ||||| |||||||| ||||| || || || ||| | | | |||| Sbjct 273743 TGTAGTCTGCAGGAGTGCGACCATCCTCAAGTTGCTTGCCAGCGAAGTTAAGTCTCTGTT 273684 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 ||| | || || ||||||||||||||||| || ||||| | || || ||||| | Sbjct 273683 CGTCTGGTTGGATCCCTTCCTTGTCTTGGATCTTGGCCTTTACATTGTCAATGGTGTCTG 273624 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | ||| || || | ||| || | || || || | ||||| |||||||||||||| Sbjct 273623 AGCTTTCAACCTCCAAAGTTATGATTTTTCCGGTAAGGGTCTTGACGAATATCTGCAT 273566 >seq1639 Length=5101707 Score = 98.7 bits (108), Expect = 2e-15 Identities = 554/871 (64%), Gaps = 12/871 (1%) Strand=Plus/Minus Query 229536 TTCCCTATTCAATACCCCGACCTCTGGGATATGTATAAGAAGGCGGTGGCAACCTTTTGG 229595 ||||| || || ||||| || ||||||| ||||| ||||| || | ||| | || ||| Sbjct 2280325 TTCCCAATCCACTACCCAGAGATCTGGGAGATGTACAAGAAAGCCGAAGCATCGTTCTGG 2280266 Query 229596 ACCACGGAGGAAGTCCCCCTAAATGCAGACG-TCGTCGACTGGCGCGAGAAACTCAACGA 229654 ||| | || ||||| ||| |||| ||| ||| ||| | || |||||||| Sbjct 2280265 ACCGCTGAAGAAGTAGATCTATCACAAGACAATCG-CGATTGGGAGAACAATCTCAACGA 2280207 Query 229655 CGATGAACGCCATTTCATCAAGCACATTCTCGGGTTTTTTGCAGGTTCCGACGGTATCGT 229714 || |||||| || |||||||| ||| | |||| || || || | || ||||| ||||| Sbjct 2280206 CGGTGAACGTCACTTCATCAAACACGTCCTCGCTTTCTTCGCCGCATCTGACGGAATCGT 2280147 Query 229715 GATGGAAAA-CTTGCAGACTAACTTCAGCGTCGAAGTAACGGTCCCAGAGGCACGGCAGT 229773 | | || || || || || |||| ||| || ||| | ||||| || | Sbjct 2280146 GTTAGAGAATCTCGCTT-CTCGATTCATGTCCGATGTTCAAGTCTCGGAGGCGCGTGCTT 2280088 Query 229774 TTTACGCATACCAGACGTTCAATGAATCTGTTCATTCGGAACAGTATGCCCTTCTTATTG 229833 | || | | ||||| | |||| |||| || || |||| || ||| | | Sbjct 2280087 TCTATGGTTTCCAGATCGCGATTGAAAACATTCACTCCGAGATGTATAGTCTCCTTCTCG 2280028 Query 229834 ACGCGCTCATTTCCGACGAGCGAGAGCGTGCCGAACTGTTCGACGCCATCGAAAACATCC 229893 | || || || | |||| | | | || || ||| || |||| || | Sbjct 2280027 ATACGTATATCAAAGATAACAAAGAGAGAGATCATCTATTTCGCGCGATTGAAACGATTC 2279968 Query 229894 CGGCGGTCCATAACAAAGCGCGTTGGGCTCAGAAGTGGCTGGAACCCAGTAAATCGTTTG 229953 | ||| || ||||| | ||||| ||| ||| | || | || | || | Sbjct 2279967 CTTGCGTCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATCGACGGATCTCAAACCTTCG 2279908 Query 229954 CAGAGCGTCTCGTCGCGTGGGTGTGCGTTGAGGGTATTCTGTTCTCCGGGAGTTTCTGCG 230013 | || || | || || | | || ||||| || || | ||||| || || || ||| Sbjct 2279907 CTGAACGAATTGTAGCTTTCGCTTGTGTTGAAGGCATCTTCTTCTCTGGAAGCTTTTGCT 2279848 Query 230014 CCATCTTTTGGCT-ACGCAACAAGGGCGTCATGCCCGGGCTCGGTCTGTCGAACGAATTC 230072 ||||||| ||||| | | ||| ||| | ||||||| ||| | | | || |||||||| Sbjct 2279847 CCATCTTCTGGCTTAAGAAACGAGGTC-TCATGCCTGGGTTAACTTTCTCAAACGAATTG 2279789 Query 230073 ATCAGCAGGGACGAAGGTCTTCACCAGCAATTTGGCGAGGTCT-TGTATTCGAAGCTAAA 230131 ||| | |||||||| | ||| || |||| || | | | || | || || Sbjct 2279788 ATCTCACGAGACGAAGGCTTACACT-GCGATTTCGCTTGCTTACTCTACACACTCCTCAA 2279730 Query 230132 TAACAAA-CTACCTTTCGAAACGGTGAAACAAATCGTCACAGAAGTAGTTGCAAATGAAA 230190 |||||| || | ||| | || |||||| || | || | | ||| | Sbjct 2279729 -AACAAAGCTGAGTGAAGAACGTATCAAGTCAATCGTTTGTGATGCGGTCGAGATTGAGA 2279671 Query 230191 AGGAGTTCATTTGCGACGCTATTCCTTGC-CGTCTTATCGGCATGAATGCTGATCTCATG 230249 ||||| | |||||||| |||| ||| ||| | | || ||||| |||| | ||| Sbjct 2279670 GAGAGTTTGTGTGCGACGCGCTTCCGTGCGCGT-TGGTTGGTATGAACCGTGATTTGATG 2279612 Query 230250 GGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTG 230309 | || ||||| || || || || ||| | |||| | || || ||||||| || ||| Sbjct 2279611 AGTCAGTATATTGAGTTTGTTGCGGATAGGCTTTTGGGTGCTCTTGGGTACGGTAAGGTG 2279552 Query 230310 TATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAAC 230369 || | | || ||||| | || ||||| || || || || ||||||||||| ||| Sbjct 2279551 TACGGTGCGACTAATCCCTTTGATTGGATGGAACTAATCTCTCTTCAGGGGAAAACCAAC 2279492 Query 230370 TTCTTCGAAAAGCGTGTCAGCGATTATCAAA 230400 || ||||| || ||||| | ||||| |||| Sbjct 2279491 TTTTTCGAGAAACGTGTTGGTGATTACCAAA 2279461 >seq1470 Length=2917085 Score = 86.0 bits (94), Expect = 1e-11 Identities = 129/181 (71%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 282919 TGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTT 282978 ||||||| |||||||| || | || || || | | || ||||||||||| | | | Sbjct 2171937 TGTTGTAATCAGCAAGAGTCCTTCCGTCATCAA-TAGTA--CCGGCAAAGATAAGTCTCT 2171881 Query 282979 GTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGT 283038 | ||| || || || |||||||| || |||||||| || ||| |||| ||||| | Sbjct 2171880 GATGGAACGGAGGGATTCCTTCCTTGTCCTGTATCTTTGCCTTCACGTTATCAATAGTAT 2171821 Query 283039 CCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCA 283098 | || ||| || || | ||| || || || || |||| |||||| || || ||||||| Sbjct 2171820 CAGAGCTTTCAACCTCCAAAGTAATGGTTTTGCCTGTCAGAGTCTTGACAAAGATCTGCA 2171761 Query 283099 T 283099 | Sbjct 2171760 T 2171760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046713128343376