Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq6 100 3e-16 seq16 93.3 4e-14 seq18 84.2 2e-11 >seq6 Length=38054609 Score = 100 bits (110), Expect = 3e-16 Identities = 370/568 (65%), Gaps = 19/568 (3%) Strand=Plus/Minus Query 16196 ATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAA 16255 || || |||||||||||||| || || |||||||||| ||| | |||||||| || Sbjct 29820163 ATCAGGCACGCGAAGTCGCAGTGAAGGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAG 29820104 Query 16256 GTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGA 16314 |||||||| ||||| ||||| ||||| | |||||| |||| |||| || || || Sbjct 29820103 GTTAACCCAGGCATGAGCCCTCGCTTCTTCAGCCAGAAGATCG-AGCAGAAGCTTCCGGA 29820045 Query 16315 AAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGT---AGCATC 16371 ||||| || || || || | ||||| || | | | || ||| | || || ||| Sbjct 29820044 GAAGAAGATCCCTTCCACGCAAGCAAACGCCACGATCCTCTCGGCGAAAGTCTGAG-ATC 29819986 Query 16372 TTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTC 16431 | || ||||| || |||||| ||| || | | ||| || ||||| Sbjct 29819985 CGT----CG-ATCCACGTCATGGCCCATTGGGCCTTCTTCGCGACGCAAGGTATGGTTTC 29819931 Query 16432 TATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAA 16491 || || || | | || | || | | |||| | || ||||| || | ||| | Sbjct 29819930 AATCGCGCGGAAGAGGTGGTCCCTCTCTTTATTATCCTTGATGTACGTGTCGAGCAGGAG 29819871 Query 16492 ACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGC 16551 |||||||| |||||||| || ||||| || || ||||| || || |||||| || || Sbjct 29819870 GCTGTACATCTCTGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAGGCACGCGC 29819811 Query 16552 CTCCGCTATTTGTACTTC-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGT 16610 ||| | | ||| || || || | || || || || ||||| ||||| |||| Sbjct 29819810 CTCGGAGACTTGCACGTCGGACAT-GAACCGGGAGGCGAGATTCTCTAAAACGATTCCGT 29819752 Query 16611 CACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAAT---ATTTTTCGTCAGATGTAA 16667 | ||| || || || || | | ||| || ||||| | | | |||| | || | Sbjct 29819751 CGGATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTCTCCGTC-GTTG--A 29819695 Query 16668 GAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAG 16727 || | | ||| || |||| ||| | ||| |||||||| | ||||| || | Sbjct 29819694 GATTCTCCCAGTCGCGAGTGTCTTGGGAGAGATCGACTTCTTCGGCGGTCCAGAAAGAGG 29819635 Query 16728 CCACTGCCTTTTTATACATTTTCCAAAT 16755 || | ||||| || ||||| | ||| || Sbjct 29819634 CCTCGGCCTTCTTGTACATCTCCCAGAT 29819607 >seq16 Length=18736220 Score = 93.3 bits (102), Expect = 4e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 16196 ATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAA 16255 || || |||||||||||||| || || ||||||||||| ||| || |||||||| || Sbjct 836960 ATCAGGCACGCGAAGTCGCAGTGCAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 836901 Query 16256 GTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGA 16314 || | ||| ||||| || || ||||| | |||||| |||| |||| || |||||| Sbjct 836900 GTGAGCCCCGGCATGAGCCCACGCTTCTTGAGCCAGAAGATCG-AGCAGAAGCTCCCCGA 836842 Query 16315 AAAGAATATACCCTCAACAGATGCAAAAGC 16344 ||||| || || || || | ||||| || Sbjct 836841 GAAGAAGATCCCTTCCACGCAAGCAAACGC 836812 >seq18 Length=77673080 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 16196 ATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAA 16255 || || |||||||| ||||| || || ||||||||||| ||| || |||||||| || Sbjct 68188277 ATCAGGCACGCGAAATCGCAGTGAAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 68188336 Query 16256 GTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGA 16314 || ||||| ||||| ||||| ||||| | |||||| |||| |||| || || || Sbjct 68188337 GTCAACCCGGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATCG-AGCAGAAGCTACCGGA 68188395 Query 16315 AAAGAATATACCCTCAAC 16332 ||||| || || || || Sbjct 68188396 GAAGAAGATCCCTTCCAC 68188413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511352096940720