Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq3 113 4e-20 seq133 104 2e-17 seq18 104 2e-17 seq1 98.7 8e-16 >seq3 Length=43957692 Score = 113 bits (124), Expect = 4e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| ||| ||||| || |||| ||| |||||||||||||||||||| || | || Sbjct 40985510 ATGGCACTTCCTCCTTGCCACATGTTTGCACAGTTTTACGTTGCAAACGGAGAGCTCTCG 40985451 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 || ||| | || ||| | || | |||||||| ||||| |||||||| |||||||| | Sbjct 40985450 TGTCAAATGTATCAGCGCTCAGCAGATATGGGTCTTGGTGTACCGTTTAACATTGCCTCA 40985391 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGT 19123 || |||||||||| | ||| |||| ||||| Sbjct 40985390 TACTCACTTCTTACATGCATCCTAGCTCATGT 40985359 Score = 113 bits (124), Expect = 4e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| ||| ||||| || |||| ||| |||||||||||||||||||| || | || Sbjct 41004488 ATGGCACTTCCTCCTTGCCACATGTTTGCACAGTTTTACGTTGCAAACGGAGAGCTCTCG 41004429 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 || ||| | || ||| | || | |||||||| ||||| |||||||| |||||||| | Sbjct 41004428 TGTCAAATGTATCAGCGCTCAGCAGATATGGGTCTTGGTGTACCGTTTAACATTGCCTCA 41004369 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGT 19123 || |||||||||| | ||| |||| ||||| Sbjct 41004368 TACTCACTTCTTACATGCATCCTAGCTCATGT 41004337 >seq133 Length=227095 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18927 CGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCA 18986 ||||| || || || ||| |||||||||| || | | |||| ||| |||||| Sbjct 171755 CGACGGATTATAATGTCGGCTTGGAATCCTTCTGACCTTAAGCTGATGGCACTTCCTCCA 171814 Query 18987 TGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAG 19046 || |||| ||| ||||||||||||||| || || || | || || ||| | || ||| Sbjct 171815 TGCCACATGTTTGCTCAGTTTTACGTTGCCAATGGAGAGCTTTCATGTCAAATGTATCAG 171874 Query 19047 AGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACC 19106 | || | |||||||| ||||| |||||||| |||||||| ||| | |||||||| Sbjct 171875 CGCTCAGCTGATATGGGTCTTGGTGTACCGTTTAACATTGCCTCATACTCCCTTCTTACA 171934 Query 19107 TACATAGTAGCGCATGT 19123 | || | || ||||| Sbjct 171935 TGTATCCTCGCTCATGT 171951 >seq18 Length=77673080 Score = 104 bits (114), Expect = 2e-17 Identities = 247/368 (67%), Gaps = 4/368 (1%) Strand=Plus/Minus Query 18870 CAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGA 18929 |||||| | |||||||| | | || || || | || || | || || || || Sbjct 7477450 CAAGGATTTGATCAGCTCCTAGACGTAATCGACAAGATCAAGAACAATCCTGATGATCGT 7477391 Query 18930 CGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGT 18989 || || || ||||| |||||||||| ||| || || |||| || |||||||| Sbjct 7477390 CGTATCATATTATCGGCTTGGAATCCTTCTGATCTCAAGTTGATGGCGCTTCCTCCATGC 7477331 Query 18990 CACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGA 19049 |||| ||| ||||| ||||| | |||| || | || || ||| | || ||| | Sbjct 7477330 CACATGTTCGCACAGTTCTACGTGGTGGACGGGGAGCTCTCGTGTCAAATGTATCAGCGT 7477271 Query 19050 TCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTAC 19109 || | |||||||||||| || || ||||| ||||||||| || | |||||||| | | Sbjct 7477270 TCAGCGGATATGGGCCTCGGTGTGCCGTTTAACATTGCTTCCTACTCTCTTCTTACTTGC 7477211 Query 19110 ATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCA 19169 || |||| ||||| | ||| | || ||||| || ||| || |||||||| Sbjct 7477210 ATGCTAGCTCATGTGTGCGATCTTGTTCCTGGTGATTTTATCCATGTCATTGGGGATGCT 7477151 Query 19170 CATATTTACTTGAATCATATAGATG-CTTTAAAAGTGCAGCTAGCTCGATCC-CCAAAAC 19227 || | || ||||| | || | || | ||| ||| || | |||| ||||||| Sbjct 7477150 CACGTGTATCGAAATCACGT-GAGGCCTCTGCAAGAGCAACT-TCAGAATCCACCAAAAC 7477093 Query 19228 CTTTTCCT 19235 |||||||| Sbjct 7477092 CTTTTCCT 7477085 >seq1 Length=45320942 Score = 98.7 bits (108), Expect = 8e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| ||| |||||||| |||| ||| ||||||||||||||| || || || | || Sbjct 9628029 ATGGCACTTCCTCCATGCCACATGTTTGCTCAGTTTTACGTTGCGAATGGAGAGCTTTCG 9628088 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 || ||| | || ||| | || | |||||||| ||||| ||||| || |||||||| | Sbjct 9628089 TGTCAAATGTATCAGCGCTCAGCTGATATGGGTCTTGGTGTACCTTTTAACATTGCCTCA 9628148 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGT 19123 || | |||||||| | ||| |||| || || Sbjct 9628149 TACTCCCTTCTTACATGCATTCTAGCTCACGT 9628180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399456547164570