Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq18 125 5e-24 seq3 105 5e-18 seq1 105 5e-18 seq133 91.5 1e-13 >seq18 Length=77673080 Score = 125 bits (138), Expect = 5e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 101692 GTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATT 101751 ||||| | ||| | ||||||||| || || ||||||||| || ||||| || |||| Sbjct 7477133 GTGATTTCGATACACGTGAGCATCCCCAATGACATGGATAAAATCACCAGGAACAAGATC 7477192 Query 101752 AGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCC 101811 |||||||| | ||||||||| | |||||| ||| |||||||||||| ||||| || Sbjct 7477193 GCACACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACC 7477252 Query 101812 TAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCT 101855 | |||||||| ||||| | ||||||| |||||| || |||| Sbjct 7477253 GAGGCCCATATCCGCTGAACGCTGATACATTTGACACGAGAGCT 7477296 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 101755 GACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAA 101814 ||||||||| | ||||| || | ||| ||||| ||||||||||| || || || | Sbjct 76170137 GACATGAGCGAGGATGCATGTAAGAAGTGAATATGAGGCAATGTTAAACGGTACACCAAG 76170196 Query 101815 CCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAA 101874 ||||| || ||||| | ||||||| |||||| ||||||| ||||| |||||||| Sbjct 76170197 ACCCATGTCTGCTGACCGCTGATACATTTGACACGAAAGCTCTCCATTTGCAACATAAAA 76170256 Query 101875 TTG 101877 || Sbjct 76170257 CTG 76170259 >seq3 Length=43957692 Score = 105 bits (116), Expect = 5e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 |||||||| || || ||||| ||| || ||||| || |||| | |||||||| | | Sbjct 31765878 TGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAGATCACACACATGAGCTAGC 31765819 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 |||||||| | |||||| ||| |||||||||||| ||||| || | | |||||| ||| Sbjct 31765818 ATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCTCATATCCGCT 31765759 Query 101828 GATCTTTGATACAGTTGACAGGAAAGCT 101855 || | ||||||| || || || |||| Sbjct 31765758 GAACGCTGATACATCTGGCATGAGAGCT 31765731 Score = 105 bits (116), Expect = 5e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 |||||||| || || ||||| ||| || ||||| || |||| | |||||||| | | Sbjct 31809863 TGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAGATCACACACATGAGCTAGC 31809922 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 |||||||| | |||||| ||| |||||||||||| ||||| || | | |||||| ||| Sbjct 31809923 ATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCTCATATCCGCT 31809982 Query 101828 GATCTTTGATACAGTTGACAGGAAAGCT 101855 || | ||||||| || || || |||| Sbjct 31809983 GAACGCTGATACATCTGGCATGAGAGCT 31810010 >seq1 Length=45320942 Score = 105 bits (116), Expect = 5e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 |||||||| || || ||||| ||| || ||||| || |||| | |||||||| | | Sbjct 31775356 TGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAGATCACACACATGAGCTAGC 31775415 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 |||||||| | |||||| ||| |||||||||||| ||||| || | | |||||| ||| Sbjct 31775416 ATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCTCATATCCGCT 31775475 Query 101828 GATCTTTGATACAGTTGACAGGAAAGCT 101855 || | ||||||| || || || |||| Sbjct 31775476 GAACGCTGATACATCTGGCATGAGAGCT 31775503 Score = 95.1 bits (104), Expect = 9e-15 Identities = 154/218 (71%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 101755 GACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAA 101814 ||| ||||| | ||||| || | ||| || || ||||||||||| || || || | Sbjct 9628181 GACGTGAGCTAGAATGCATGTAAGAAGGGAGTATGAGGCAATGTTAAAAGGTACACCAAG 9628122 Query 101815 CCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCA-TCACAGACATAAA 101873 |||||||||||||| | ||||||| |||||| ||||||| |||| || || || |||| Sbjct 9628121 ACCCATATCAGCTGAGCGCTGATACATTTGACACGAAAGCTCTCCATTCGCA-ACGTAAA 9628063 Query 101874 ATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAG 101933 | ||| || | || || || || | |||| || ||| ||| |||||||| Sbjct 9628062 ACTGAGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAG 9628003 Query 101934 CACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTT 101971 || |||||| |||| | ||| || || ||||| || Sbjct 9628002 CAGACATTATAATCCGCCGATC-GTCAGGATTGTTCTT 9627966 >seq133 Length=227095 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/217 (70%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 101755 GACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAA 101814 ||||||||| | || || || | ||| || || ||||||||||| || || || | Sbjct 171952 GACATGAGCGAGGATACATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCAAG 171893 Query 101815 CCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAA 101874 |||||||||||||| | ||||||| |||||| ||||||| ||||| || ||||| Sbjct 171892 ACCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCTCCATTGGCAACGTAAAA 171833 Query 101875 TTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGC 101934 ||| || | || || || || | |||| || ||| ||| ||||||||| Sbjct 171832 CTGAGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAGC 171773 Query 101935 ACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTT 101971 |||||| |||| || ||| || || ||||| || Sbjct 171772 CGACATTATAATCCGTCGATC-GTCAGGATTGTTCTT 171737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361208290808246