Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq18 114 2e-20 seq159 109 7e-19 seq6 109 7e-19 seq8 86.0 7e-12 >seq18 Length=77673080 Score = 114 bits (126), Expect = 2e-20 Identities = 383/586 (65%), Gaps = 10/586 (2%) Strand=Plus/Plus Query 24129 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 24188 |||| || |||||||||||||| || || |||||||| || | |||||||| || Sbjct 68188277 ATCAGGCACGCGAAATCGCAGTGAAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 68188336 Query 24189 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 24247 || | |||||||| || || ||||| || ||||| || || || ||| | | | || || Sbjct 68188337 GTCAACCCGGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATCGA-GCAGAAGCTACCGGA 68188395 Query 24248 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAA--CCGGCGCTG 24305 ||||| || ||||| || ||| ||||| | | || || | || | || | Sbjct 68188396 GAAGAAGATCCCTTCCACGCACGCGAAGGCCACGATCCTCTCGGCGAAAGTCTGGGAC-- 68188453 Query 24306 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 24365 ||| |||||| | ||||| | ||||||||| || || || || ||||| || Sbjct 68188454 CCATCGATCCACGTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATC 68188513 Query 24366 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 24425 || ||||||| || | || || | || || | || || || | || || || Sbjct 68188514 GCGCGGAAGAGATGGTCCCTCTCCTTGTTGTCCTTGATGTACGTGTCTAACAGGAGGCTG 68188573 Query 24426 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 24485 ||||| || || || ||||| || || || || || || |||||||| | |||||| Sbjct 68188574 TACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCG 68188633 Query 24486 GTAATCTGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 24544 | | ||| || || ||| || ||| || | || || || |||||||| Sbjct 68188634 GAGACCTGGACGTC-GGACATGAACCGTGAGGCGAGGTTCTCGAGGACGATTCCGTCGGA 68188692 Query 24545 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTAT 24603 ||| || || || || | || ||||| || || | || || | ||| || || | Sbjct 68188693 GGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTC-TCCGTCGTTGAGATTCT 68188751 Query 24604 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 24663 ||| || | || | || | || ||||| || | ||||| || || ||||| | Sbjct 68188752 CCCAGTCGCGTGTGTCCTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCCTCGG 68188811 Query 24664 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 |||| || ||||| | |||||| | | ||||| ||||| || || Sbjct 68188812 CCTTCTTGTACATCTCCCAGATCTGCGGGTATTGGATTGGGAACAT 68188857 >seq159 Length=194462 Score = 109 bits (120), Expect = 7e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 |||||| | ||| || | || |||||||| || ||||||||| | ||| | || || Sbjct 113489 AGTTCCTGAATTGAAGAGAGTGGGAGAAGCATGAGTAAACCATCGCTGAGACATTAAATG 113430 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 ||| || | |||||| || || ||||| || || || || || | ||| | ||| | Sbjct 113429 GTAAGTTTGGATAGCAGAATCAATATCTTCTTTGTGGATGCCAACAGAGACCCTCATGAG 113370 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 |||||||||||| |||||||| | || || | ||||| | ||| ||| | || | Sbjct 113369 CATGTGCTGAGGCCTTTCAACAACTTTCGCATTGACTTTCAAGAGGTATGATCTCTCAAG 113310 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 |||||| || ||||| |||| ||| ||| || || ||||| || || Sbjct 113309 AGTTTTGAATCCAAAGTAGTCATATTCAAAATCACGATCGTAGATGAT 113262 >seq6 Length=38054609 Score = 109 bits (120), Expect = 7e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 |||||| | ||||| | || ||||| || || || |||||| | ||| | || || Sbjct 36616049 AGTTCCAGAGTTAAAGAGAGTCGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATG 36616108 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 ||| |||| || |||||| || |||||| || |||||| || || | || | ||| | Sbjct 36616109 GTAAGTCTGGACAGCTGAATCAATATCCTGTTTATGAATGCCAACAGAAACCCTCATGAG 36616168 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 |||||||||||| |||||||| | || | | ||||| | ||| ||| | || | Sbjct 36616169 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTCAAGAGGTATGATCTCTCAAG 36616228 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||| || || || || |||| ||| |||||| || |||||||| || Sbjct 36616229 AGTCTTGAATCCGAAGTAGTCATATTCAAAGTCCCGGTCGTAAATGAT 36616276 >seq8 Length=29345952 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| | ||| || | || ||||| || || ||||||||| | | ||| | || || | Sbjct 19411249 GTTCCTGAATTGAAGAGAGTCGGAGACGCATGAGTAAACCATCTCTGAGACATTAAATGG 19411308 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || || | ||| || || || ||||| || ||||| || || | || | ||| | | Sbjct 19411309 TAAGTTTTGATTGCGGAATCAATATCTTCTTTGTGAATGCCAACAGAAACCCTCATGAGC 19411368 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 || ||||||||||| ||||| | || | | ||| | | ||| ||| | || | Sbjct 19411369 ATATGCTGAGGTCTCTCAACCACTTTCCCATGGACTTTTAAGAGGTATGATCTCTCAAGT 19411428 Query 54605 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||| || ||||| |||| ||| ||| || || || ||||| || Sbjct 19411429 GTTTTGAACCCAAAGTAGTCGTACTCAAAATCACGATCATAAATGAT 19411475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593649269866080