Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq13 102 7e-17 seq18 86.0 5e-12 seq1 86.0 5e-12 seq10 82.4 7e-11 seq5 82.4 7e-11 >seq13 Length=83567108 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || | || || || ||||| ||| ||| |||| | | Sbjct 62923659 ATGCAGATCTTCGTTAAGACTCTCACAGGAAAGACCATCACCCTCGAGGTGGAAAACTCC 62923718 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | | |||| || ||| ||||| ||||| | ||| ||||| Sbjct 62923719 GACACGATCGACAACGTTAAAGCCAAGATTCAGGATAAGGAAGGCATTCCCCCGGATCAG 62923778 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| |||||||| || || || || |||||||| || || ||||||||||||| Sbjct 62923779 CAAAGGCTTATCTTCGCCGGGAAGCAGCTGGAAGACGGCAGGACGTTGGCCGATTACAAC 62923838 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || ||||||||||||||||| ||| |||| Sbjct 62923839 ATCCAGAAGGAATCTACTCTCCACTTGGT 62923867 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||| || ||||| || ||||||||||| || ||| || Sbjct 62923887 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAAACCATTACTTTGGAGGTGGAGAGTTCA 62923946 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || |||| || ||| ||||| || ||| | || || || Sbjct 62923947 GATACCATCGACAATGTTAAAGCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGACCAG 62924006 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | |||||||| || || ||||| |||||| ||| | || || ||||| Sbjct 62924007 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGGCGTACTCTTGCTGACTACAAC 62924066 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGGTA 29191 ||||| ||||||||||| |||||| |||| ||||| |||| || ||||| Sbjct 62924067 ATTCAAAAGGAATCTACACTTCACTTGGTCTTACGTCTACGTGG-GGGTA 62924115 >seq18 Length=77673080 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || | || ||||||||||| || || ||| | || Sbjct 62463344 ATGCAGATTTTCGTGAAGACCCTCACAGGCAAAACCATCACTCTTGAGGTGGAGAGCTCA 62463403 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | | | ||| ||| ||| || || ||||| | || ||| || Sbjct 62463404 GACACGATTGACAACGTCAAGGCAAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAG 62463463 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||||| ||||| || || ||||| || || ||| || | || ||||||||| Sbjct 62463464 CAGAGACTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGTACGCTTGCGGATTACAAT 62463523 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||||||||||||||| |||||| | ||||| || Sbjct 62463524 ATTCAGAAGGAATCTACCCTTCACCTTGTGTTGCG 62463558 >seq1 Length=45320942 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 || || || || |||||||| || || || ||| |||||||| || || |||||||| Sbjct 18861447 GACCAGCAGAGGCTTATCTTCGCTGGAAAGCAATTGGAAGATGGCAGGACCTTGGCCGAT 18861388 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||| ||||||||||| ||||| |||||| |||| Sbjct 18861387 TACAACATTCAGAAGGAGTCTACGCTTCACTTGGT 18861353 >seq10 Length=22354415 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||||||||| | || || ||||| ||||| || |||||| ||| ||| | | Sbjct 21870338 AATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAAGTTGAAAGCTC 21870397 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | | || | ||| || ||| || || ||||| | || || || Sbjct 21870398 AGACACAATCGACAATGTGAAGGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGACCA 21870457 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| ||||| ||||| || || ||||| || || ||| || | || |||||||| Sbjct 21870458 ACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGCACGCTTGCAGATTACAA 21870517 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||||||||| || ||||| || |||| Sbjct 21870518 CATTCAGAAGGAGTCGACTCTGCATTTGGT 21870547 >seq5 Length=38841276 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||||||| | || ||| |||||||| || ||||| || || || || || ||| Sbjct 4761492 GACAAAGAAGGTATACCACCAGACCAACAAAGGCTCATCTTCGCCGGTAAGCAGCTCGAA 4761433 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 || || ||| | ||||||||||| || ||||| || ||||||||||| Sbjct 4761432 GACGGCAGAACCCTAGCCGATTACAACATCCAGAAAGAGTCTACTCTTCA 4761383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428285122517630