Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq18 109 6e-19 seq3 105 8e-18 seq1 105 8e-18 >seq18 Length=77673080 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 145683 CAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCC 145742 ||| ||| |||||| || | || ||||| || ||||| | ||| ||||| || || || Sbjct 7477121 CAGAGGCCTCACGTGATTTCGATACACGTGAGCATCCCCAATGACATGGATAAAATCACC 7477180 Query 145743 GGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTT 145802 || | || | | || || | |||| | || || || |||||| || ||||| Sbjct 7477181 AGGAACAAGATCGCACACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTT 7477240 Query 145803 GAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCC 145862 || ||||| || || ||||| ||| | || ||||| |||| || || ||||||||||| Sbjct 7477241 AAACGGCACACCGAGGCCCATATCCGCTGAACGCTGATACATTTGACACGAGAGCTCCCC 7477300 Query 145863 GCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 | || ||||||||||||| | | |||||| || || || ||||| Sbjct 7477301 GTCCACCACGTAGAACTGTGCGAACATGTGGCATGGAGGAAGCGCCAT 7477348 >seq3 Length=43957692 Score = 105 bits (116), Expect = 8e-18 Identities = 180/256 (70%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || ||| |||||| | | || || || || ||||| | ||| |||| || || || Sbjct 31765905 AGAGGCCTCACGTGAGTTCGATACACATGAGCATCCCCAATGACATGGACAAAATCACCA 31765846 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTG 145803 || | || | | || || | |||| | || || || |||||| || ||||| Sbjct 31765845 GGGACAAGATCACACACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTA 31765786 Query 145804 AAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCG 145863 || ||||| || || | ||| ||| | || ||||| |||| |||||| ||||||||||| Sbjct 31765785 AACGGCACACCAAGGCTCATATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCT 31765726 Query 145864 CCCGCCACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCAT-GGCGGGCAGGT 145921 ||||||| |||||||| ||| | | |||||| || ||||| ||||| || | |||| Sbjct 31765725 TCCGCCACATAGAACTGCGCA-AACATGTGGCACGGAGGCAGCGCCATCAGCTTG-AGGT 31765668 Query 145922 CCGCCGGGTTCCAGGC 145937 | | |||||||| || Sbjct 31765667 CAGAAGGGTTCCAAGC 31765652 Score = 105 bits (116), Expect = 8e-18 Identities = 180/256 (70%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || ||| |||||| | | || || || || ||||| | ||| |||| || || || Sbjct 31809836 AGAGGCCTCACGTGAGTTCGATACACATGAGCATCCCCAATGACATGGACAAAATCACCA 31809895 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTG 145803 || | || | | || || | |||| | || || || |||||| || ||||| Sbjct 31809896 GGGACAAGATCACACACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTA 31809955 Query 145804 AAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCG 145863 || ||||| || || | ||| ||| | || ||||| |||| |||||| ||||||||||| Sbjct 31809956 AACGGCACACCAAGGCTCATATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCT 31810015 Query 145864 CCCGCCACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCAT-GGCGGGCAGGT 145921 ||||||| |||||||| ||| | | |||||| || ||||| ||||| || | |||| Sbjct 31810016 TCCGCCACATAGAACTGCGCA-AACATGTGGCACGGAGGCAGCGCCATCAGCTTG-AGGT 31810073 Query 145922 CCGCCGGGTTCCAGGC 145937 | | |||||||| || Sbjct 31810074 CAGAAGGGTTCCAAGC 31810089 >seq1 Length=45320942 Score = 105 bits (116), Expect = 8e-18 Identities = 180/256 (70%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || ||| |||||| | | || || || || ||||| | ||| |||| || || || Sbjct 31775329 AGAGGCCTCACGTGAGTTCGATACACATGAGCATCCCCAATGACATGGACAAAATCACCA 31775388 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTG 145803 || | || | | || || | |||| | || || || |||||| || ||||| Sbjct 31775389 GGGACAAGATCACACACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTA 31775448 Query 145804 AAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCG 145863 || ||||| || || | ||| ||| | || ||||| |||| |||||| ||||||||||| Sbjct 31775449 AACGGCACACCAAGGCTCATATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCT 31775508 Query 145864 CCCGCCACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCAT-GGCGGGCAGGT 145921 ||||||| |||||||| ||| | | |||||| || ||||| ||||| || | |||| Sbjct 31775509 TCCGCCACATAGAACTGCGCA-AACATGTGGCACGGAGGCAGCGCCATCAGCTTG-AGGT 31775566 Query 145922 CCGCCGGGTTCCAGGC 145937 | | |||||||| || Sbjct 31775567 CAGAAGGGTTCCAAGC 31775582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590004913893840