Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq13 89.7 4e-13 seq12 87.8 1e-12 seq1 86.0 5e-12 seq18 82.4 6e-11 >seq13 Length=83567108 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | || || | || || || ||||| ||| ||| |||| | | Sbjct 62923659 ATGCAGATCTTCGTTAAGACTCTCACAGGAAAGACCATCACCCTCGAGGTGGAAAACTCC 62923718 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | | | || || ||| ||||| ||||| | ||| ||||| Sbjct 62923719 GACACGATCGACAACGTTAAAGCCAAGATTCAGGATAAGGAAGGCATTCCCCCGGATCAG 62923778 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| |||||||| || || || || ||||||| || || ||||||||||||| Sbjct 62923779 CAAAGGCTTATCTTCGCCGGGAAGCAGCTGGAAGACGGCAGGACGTTGGCCGATTACAAC 62923838 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243 || || |||||||||||||| ||| |||| Sbjct 62923839 ATCCAGAAGGAATCTACTCTCCACTTGGT 62923867 >seq12 Length=60369500 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| |||||| | || ||||| || || |||||||| || || || ||||||||| Sbjct 48264409 GATAAGGAAGGTATCCCACCGGATCAGCAGAGGCTTATCTTCGCCGGAAAGCAATTGGAA 48264468 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||| || || |||| || |||||||| || ||||| ||||| |||||| |||| Sbjct 48264469 GATGGCAGGACCTTGGCTGACTACAATATCCAGAAGGAGTCTACCCTTCACTTGGT 48264524 >seq1 Length=45320942 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 || || || || |||||||| || || || |||||||||||| || || |||||||| Sbjct 18861447 GACCAGCAGAGGCTTATCTTCGCTGGAAAGCAATTGGAAGATGGCAGGACCTTGGCCGAT 18861388 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||||| ||||| ||||| ||||| |||||| |||| Sbjct 18861387 TACAACATTCAGAAGGAGTCTACGCTTCACTTGGT 18861353 >seq18 Length=77673080 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | || || | || ||||||||||| || || ||| | || Sbjct 62463344 ATGCAGATTTTCGTGAAGACCCTCACAGGCAAAACCATCACTCTTGAGGTGGAGAGCTCA 62463403 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | | ||||| ||| ||| || || ||||| | || ||| || Sbjct 62463404 GACACGATTGACAACGTCAAGGCAAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAG 62463463 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||||| ||||| || || ||||| | || ||| || | || ||||||||| Sbjct 62463464 CAGAGACTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGTACGCTTGCGGATTACAAT 62463523 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||| ||||||||||| |||||| | ||||| || Sbjct 62463524 ATTCAGAAGGAATCTACCCTTCACCTTGTGTTGCG 62463558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410748005812844