Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq18 104 2e-17 seq3 102 6e-17 seq1 102 6e-17 >seq18 Length=77673080 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 97032 AAGCTGCTCTGTGAGAG-CATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGT 97090 ||| |||||| |||| | ||| |||||| ||| | ||||||||| || | | Sbjct 7477109 AAGTTGCTCTTGCAGAGGCCTCAC-GTGATTTCGATACACGTGAGCATCCCCAATGACAT 7477167 Query 97091 GAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAAT 97150 | ||||| || |||||||| | ||| ||||| || | ||| ||||| | ||||| | Sbjct 7477168 GGATAAAATCACCAGGAACAAGATCGCACACATGAGCTAGCATGCAAGTAAGAAGAGAGT 7477227 Query 97151 AGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGAC 97210 || |||||||||||| ||||| || || |||||||| ||||| | ||||| | |||| Sbjct 7477228 AGGAAGCAATGTTAAACGGCACACCGAGGCCCATATCCGCTGAACGCTGATACATTTGAC 7477287 Query 97211 AGGAAAGCTTTCCATCACACACATAAAACTG 97241 | || |||| || || ||| || ||||| Sbjct 7477288 ACGAGAGCTCCCCGTCCACCACGTAGAACTG 7477318 >seq3 Length=43957692 Score = 102 bits (112), Expect = 6e-17 Identities = 172/243 (71%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 97032 AAGCTGCTCTGTGAGAG-CATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGT 97090 |||||||||| |||| | ||| |||| | ||| | |||||||| || | | Sbjct 31765918 AAGCTGCTCTTGAAGAGGCCTCAC-GTGAGTTCGATACACATGAGCATCCCCAATGACAT 31765860 Query 97091 GAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAAT 97150 | | ||| || ||||| || | |||| ||||| || | ||| ||||| | ||||| | Sbjct 31765859 GGACAAAATCACCAGGGACAAGATCACACACATGAGCTAGCATGCAAGTAAGAAGAGAGT 31765800 Query 97151 AGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGAC 97210 || |||||||||||| ||||| || || | |||||| ||||| | ||||| | ||| | Sbjct 31765799 AGGAAGCAATGTTAAACGGCACACCAAGGCTCATATCCGCTGAACGCTGATACATCTGGC 31765740 Query 97211 AGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACA--TGACAGGGGGGCAACGC 97268 | || |||| || || |||||| ||||| | ||| ||| || || || |||| ||| Sbjct 31765739 ATGAGAGCTCCCCTTCCGCCACATAGAACTG-CGCAA-ACATGTGGCACGGAGGCAGCGC 31765682 Query 97269 CAT 97271 ||| Sbjct 31765681 CAT 31765679 Score = 102 bits (112), Expect = 6e-17 Identities = 172/243 (71%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 97032 AAGCTGCTCTGTGAGAG-CATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGT 97090 |||||||||| |||| | ||| |||| | ||| | |||||||| || | | Sbjct 31809823 AAGCTGCTCTTGAAGAGGCCTCAC-GTGAGTTCGATACACATGAGCATCCCCAATGACAT 31809881 Query 97091 GAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAAT 97150 | | ||| || ||||| || | |||| ||||| || | ||| ||||| | ||||| | Sbjct 31809882 GGACAAAATCACCAGGGACAAGATCACACACATGAGCTAGCATGCAAGTAAGAAGAGAGT 31809941 Query 97151 AGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGAC 97210 || |||||||||||| ||||| || || | |||||| ||||| | ||||| | ||| | Sbjct 31809942 AGGAAGCAATGTTAAACGGCACACCAAGGCTCATATCCGCTGAACGCTGATACATCTGGC 31810001 Query 97211 AGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACA--TGACAGGGGGGCAACGC 97268 | || |||| || || |||||| ||||| | ||| ||| || || || |||| ||| Sbjct 31810002 ATGAGAGCTCCCCTTCCGCCACATAGAACTG-CGCAA-ACATGTGGCACGGAGGCAGCGC 31810059 Query 97269 CAT 97271 ||| Sbjct 31810060 CAT 31810062 >seq1 Length=45320942 Score = 102 bits (112), Expect = 6e-17 Identities = 172/243 (71%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 97032 AAGCTGCTCTGTGAGAG-CATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGT 97090 |||||||||| |||| | ||| |||| | ||| | |||||||| || | | Sbjct 31775316 AAGCTGCTCTTGAAGAGGCCTCAC-GTGAGTTCGATACACATGAGCATCCCCAATGACAT 31775374 Query 97091 GAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAAT 97150 | | ||| || ||||| || | |||| ||||| || | ||| ||||| | ||||| | Sbjct 31775375 GGACAAAATCACCAGGGACAAGATCACACACATGAGCTAGCATGCAAGTAAGAAGAGAGT 31775434 Query 97151 AGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGAC 97210 || |||||||||||| ||||| || || | |||||| ||||| | ||||| | ||| | Sbjct 31775435 AGGAAGCAATGTTAAACGGCACACCAAGGCTCATATCCGCTGAACGCTGATACATCTGGC 31775494 Query 97211 AGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACA--TGACAGGGGGGCAACGC 97268 | || |||| || || |||||| ||||| | ||| ||| || || || |||| ||| Sbjct 31775495 ATGAGAGCTCCCCTTCCGCCACATAGAACTG-CGCAA-ACATGTGGCACGGAGGCAGCGC 31775552 Query 97269 CAT 97271 ||| Sbjct 31775553 CAT 31775555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346742809213220