Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq10 118 2e-21 seq12 107 3e-18 seq8 104 4e-17 seq9 98.7 1e-15 seq18 95.1 2e-14 seq14 91.5 2e-13 seq13 89.7 8e-13 seq17 86.0 9e-12 seq5 86.0 9e-12 >seq10 Length=22354415 Score = 118 bits (130), Expect = 2e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAA 124596 ||||||||||||| | ||||| | |||||||| ||||| || | || ||||| || Sbjct 21870338 AATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAAGTTGAAAGCTC 21870397 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | || ||||| ||| | || || ||||| || || ||||| || || || || | Sbjct 21870398 A-GACACAATCGACAATGTGAAGGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGACC 21870456 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 |||| || || || || || || ||||| | |||||| |||| || | | |||||| | Sbjct 21870457 AACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGCACGCTTGCAGATTACA 21870516 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 | ||||| || || || ||| ||||||||||| | ||| | || ||||| Sbjct 21870517 ACATTCAGAAGGAGTCGACTCTGCATTTGGTTCTGCGTCTTCGTGGTGG 21870565 >seq12 Length=60369500 Score = 107 bits (118), Expect = 3e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| || | ||||| || || ||||| ||||| || | ||| |||| ||| Sbjct 48265228 ATGCAAATCTTCGTGAAGACTCTCACCGGCAAGACTATCACATTGGAGGTTGAGAGCTCC 48265287 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | || || || ||||| ||||| ||||| ||||||||||| Sbjct 48265288 -GACACCATTGACAACGTGAAGGCCAAGATCCAAGACAAAGAGGGTATTCCACCTGATCA 48265346 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || || ||||| || ||| | |||||| |||| || || | ||| || || Sbjct 48265347 GCAAAGGTTGATCTTCGCAGGCAAGCAACTTGAGGATGGTCGCACCTTGGCAGACTACAA 48265406 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || || || || || || | || ||||| | ||| |||| ||||| Sbjct 48265407 CATCCAGAAGGAGTCGACCCTTCACTTGGTCCTCCGTCTACGTGGTGG 48265454 >seq8 Length=29345952 Score = 104 bits (114), Expect = 4e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || ||||| || ||||||||||||||||| ||||| || ||||| || |||||| | Sbjct 8464351 CAGGACAAAGAGGGGATACCACCTGATCAACAGAGGCTCATCTTTGCTGGGAAACAACTT 8464410 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 |||||| ||||||| ||| || || || ||||| ||||| || ||| | || |||||| Sbjct 8464411 GAGGATGGTCGAACGCTAGCTGACTACAACATTCAGAAAGAGTCCACTCTTCACTTGGTT 8464470 >seq9 Length=62778564 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/210 (71%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 124535 TACA-ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-A 124592 |||| ||||| || || | |||||||| ||||| || || || ||| | ||| | || | Sbjct 30496696 TACAGATGCAGATCTTCGTTAAGACACTGACAGGGAAGACGATCACTTTGGAGGTGGAGA 30496755 Query 124593 GCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCT 124652 || |||||| || || | ||| || ||||| |||||||||||||| || || Sbjct 30496756 GCTC-TGATACCATCGACAACGTTAAAGCCAAGATTCAGGATAAAGAAGGTATTCCTCCG 30496814 Query 124653 GATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGAT 124712 ||||| ||||| | || ||||| || || || | || ||| | || || | | || Sbjct 30496815 GATCAGCAAAGATTGATCTTTGCCGGTAAGCAGCTTGAAGATGGGCGTACCCTCGCTGAC 30496874 Query 124713 TATAATATTCAAAAAGAATCAACTTTGCAT 124742 || || |||||||| || |||||||||||| Sbjct 30496875 TACAACATTCAAAAGGAGTCAACTTTGCAT 30496904 >seq18 Length=77673080 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | ||||| || ||||||||||| || ||| | ||| | || ||| | Sbjct 62463344 ATGCAGATTTTCGTGAAGACCCTCACAGGCAAAACCATCACTCTTGAGGTGGAGAGCTCA 62463403 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | || || ||||| || || ||||| || ||||| || || Sbjct 62463404 -GACACGATTGACAACGTCAAGGCAAAGATTCAGGACAAGGAAGGGATCCCACCAGACCA 62463462 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || || || || || || ||||| | |||||| |||| || | | ||||| || Sbjct 62463463 GCAGAGACTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGTACGCTTGCGGATTACAA 62463522 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| || ||||| || | || | || || ||| | || |||||||| Sbjct 62463523 TATTCAGAAGGAATCTACCCTTCACCTTGTGTTGCGTCTTCGTGGTGGTAT 62463573 >seq14 Length=28343526 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || ||||| | ||||||||||||||||| || || || || || || |||||| | Sbjct 25043690 CAGGACAAAGAGGAGATACCACCTGATCAACAGAGACTCATCTTCGCTGGGAAACAACTT 25043631 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 |||||| ||||||| ||| || || || ||||| ||||| || ||| | || |||||| Sbjct 25043630 GAGGATGGTCGAACGCTAGCTGACTACAACATTCAGAAAGAGTCCACTCTTCACTTGGTT 25043571 >seq13 Length=83567108 Score = 89.7 bits (98), Expect = 8e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | |||||||| || || || || || ||| | ||| | || || | Sbjct 62924115 ATGCAGATTTTCGTTAAGACACTGACCGGGAAGACCATCACTCTGGAGGTGGAGAGTTCA 62924174 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || ||| | || || || ||||| || ||||| || || || || || Sbjct 62924175 -GACACTATAGACAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCAGACCA 62924233 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || || || ||||| ||||| || ||||||| | ||||| | | ||||| || Sbjct 62924234 GCAGAGACTCATCTTTGCCGGAAAGCAGCTAGAGGACGGCAGAACACTGGCTGATTACAA 62924293 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||| || || | || ||||| || ||| | ||||||||||| Sbjct 62924294 CATTCAGAAAGAGTCTACGCTTCACTTGGTCTTGCGTCTCCGAGGTGGTAT 62924344 >seq17 Length=44223734 Score = 86.0 bits (94), Expect = 9e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | |||||||| || || || || || || ||||| | || ||| Sbjct 38927868 ATGCAGATCTTTGTCAAGACACTCACCGGAAAGACGATCACACTAGAGGTGGAGAGCTCC 38927927 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || ||| | || || || ||||| || || || || ||||||||||| Sbjct 38927928 -GACACCATCGATAACGTCAAGGCTAAGATCCAAGACAAGGAGGGAATCCCACCTGATCA 38927986 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || ||||| || || || | |||||| || |||| ||| || || || Sbjct 38927987 GCAGAGGTTGATCTTTGCCGGGAAGCAGCTCGAGGATGGTAGAACTCTAGCTGACTACAA 38928046 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || ||| ||||| |||| || ||| | || || || || Sbjct 38928047 CATCCAGAAGGAGTCGACTCTGCATCTGGTGTTGCGTCTGCGTGGAGGCAT 38928097 >seq5 Length=38841276 Score = 86.0 bits (94), Expect = 9e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| ||||||| || || || || ||||| | || Sbjct 24217592 ATGCAGATCTTCGTGAAGACTTTAACAGGAAAGACGATCACGCTAGAGGTGGAGAGTTCC 24217651 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | ||| ||||| || || ||||| ||||| || || || || Sbjct 24217652 GACACCATTGACAACGTGAAAGCCAAAATCCAGGACAAAGAGGGTATTCCTCCAGACCAG 24217711 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || || || || ||||| | |||||| |||| || || | || ||||| Sbjct 24217712 CAGAGGCTGATCTTCGCTGGCAAACAGCTTGAGGATGGTCGTACTTTGGCTGACTATAAC 24217771 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||||||| | || |||| | | | || |||||||| Sbjct 24217772 ATCCAGAAAGAATCAACTCTTCACCTGGTGCTCAGGCTCCGTGGTGGTAT 24217821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755363966572800